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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G46770
Z-value: 1.25
Transcription factors associated with AT2G46770
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G46770
|
AT2G46770 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NST1 | arTal_v1_Chr2_-_19222916_19222916 | -0.39 | 4.2e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 6.56 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 5.86 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 5.80 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 5.78 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 5.55 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 5.46 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr5_-_15382071_15382071 Show fit | 5.25 |
AT5G38420.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 4.91 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 4.85 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr2_+_14577083_14577083 Show fit | 4.85 |
AT2G34620.1
|
Mitochondrial transcription termination factor family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G46770
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 53.1 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.6 | 25.6 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.5 | 21.6 | GO:0000038 | very long-chain fatty acid metabolic process(GO:0000038) |
| 0.3 | 19.3 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.9 | 16.4 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.3 | 15.7 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 1.5 | 13.3 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.4 | 12.4 | GO:0006284 | base-excision repair(GO:0006284) |
| 1.7 | 12.0 | GO:0019464 | glycine decarboxylation via glycine cleavage system(GO:0019464) |
| 0.1 | 10.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 120.6 | GO:0048046 | apoplast(GO:0048046) |
| 0.2 | 59.7 | GO:0031976 | plastid thylakoid(GO:0031976) |
| 0.1 | 32.5 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 22.6 | GO:0005576 | extracellular region(GO:0005576) |
| 0.5 | 21.6 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.1 | 20.2 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 1.4 | 19.1 | GO:0009522 | photosystem I(GO:0009522) |
| 0.7 | 16.4 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.1 | 14.2 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 13.9 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.9 | 29.4 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.2 | 24.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.3 | 22.0 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.9 | 20.6 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.7 | 17.9 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 15.0 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.7 | 14.1 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
| 0.2 | 12.6 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.5 | 11.9 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 1.2 | 10.9 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 4.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 1.1 | 4.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.3 | 3.6 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.6 | 3.3 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.5 | 2.9 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 1.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.4 | 1.3 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.3 | 1.3 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.2 | 0.8 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.2 | 0.7 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 9.3 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 1.4 | 4.3 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.2 | 4.2 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.2 | 3.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.6 | 2.8 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.7 | 2.0 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.2 | 1.9 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.4 | 1.7 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.2 | 1.7 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
| 0.5 | 1.6 | REACTOME SPRY REGULATION OF FGF SIGNALING | Genes involved in Spry regulation of FGF signaling |