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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G46680
Z-value: 1.89
Transcription factors associated with AT2G46680
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G46680
|
AT2G46680 | homeobox 7 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB-7 | arTal_v1_Chr2_-_19166949_19166967 | 0.73 | 9.5e-06 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 5.59 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 5.29 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr2_-_18077517_18077517 Show fit | 4.93 |
AT2G43570.1
|
chitinase |
|
| arTal_v1_Chr3_+_19239305_19239412 Show fit | 4.46 |
AT3G51860.1
AT3G51860.2 |
cation exchanger 3 |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 4.42 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr2_+_12600914_12601033 Show fit | 4.41 |
AT2G29350.2
AT2G29350.1 AT2G29350.3 |
senescence-associated gene 13 |
|
| arTal_v1_Chr4_+_6491017_6491017 Show fit | 4.37 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr1_+_23887809_23887809 Show fit | 4.30 |
AT1G64360.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_5133860_5133860 Show fit | 4.29 |
AT1G14880.1
|
PLANT CADMIUM RESISTANCE 1 |
|
| arTal_v1_Chr2_-_15599951_15599951 Show fit | 4.23 |
AT2G37130.2
|
Peroxidase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G46680
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 37.3 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 24.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 19.9 | GO:0007568 | aging(GO:0007568) |
| 0.1 | 18.6 | GO:0006979 | response to oxidative stress(GO:0006979) |
| 0.4 | 18.3 | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) |
| 0.5 | 17.3 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.2 | 16.6 | GO:0042594 | response to starvation(GO:0042594) |
| 0.3 | 13.0 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.6 | 9.7 | GO:0009697 | salicylic acid biosynthetic process(GO:0009697) |
| 1.1 | 9.6 | GO:0051410 | detoxification of nitrogen compound(GO:0051410) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 65.8 | GO:0005829 | cytosol(GO:0005829) |
| 0.2 | 19.8 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 11.9 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 11.3 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.6 | 11.1 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.2 | 10.7 | GO:0016592 | mediator complex(GO:0016592) |
| 0.1 | 10.7 | GO:0005768 | endosome(GO:0005768) |
| 0.3 | 10.6 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 10.0 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.1 | 8.7 | GO:0005635 | nuclear envelope(GO:0005635) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 28.5 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.2 | 26.1 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.0 | 23.1 | GO:0000976 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 22.8 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 21.1 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 17.5 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.1 | 16.3 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.3 | 13.4 | GO:0015081 | sodium ion transmembrane transporter activity(GO:0015081) |
| 0.1 | 13.1 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.3 | 10.3 | GO:0080030 | methyl indole-3-acetate esterase activity(GO:0080030) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 3.4 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 1.0 | 2.9 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.2 | 1.7 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 1.4 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.4 | 1.2 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.2 | 1.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.3 | 1.0 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.3 | 0.9 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.3 | 0.9 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.3 | 0.7 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.4 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.8 | 2.3 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.3 | 2.3 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.7 | 2.2 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
| 0.5 | 1.9 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.3 | 1.6 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.3 | 1.4 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.1 | 1.3 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.4 | 1.2 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
| 0.2 | 1.2 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |