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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G46590
Z-value: 0.78
Transcription factors associated with AT2G46590
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G46590
|
AT2G46590 | Dof-type zinc finger DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DAG2 | arTal_v1_Chr2_+_19132925_19133005 | 0.53 | 3.7e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 2.20 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 1.94 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 1.76 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 1.66 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 1.61 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr1_-_11668690_11668690 Show fit | 1.60 |
AT1G32350.1
AT1G32350.2 |
alternative oxidase 1D |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 1.57 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr2_+_13674255_13674398 Show fit | 1.56 |
AT2G32190.2
AT2G32190.1 |
cysteine-rich/transmembrane domain A-like protein |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 1.55 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr1_+_5820080_5820080 Show fit | 1.46 |
AT1G17020.1
|
senescence-related gene 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G46590
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 9.6 | GO:0010260 | organ senescence(GO:0010260) |
| 0.0 | 8.7 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.4 | 6.1 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 0.1 | 6.1 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 5.1 | GO:0034620 | cellular response to unfolded protein(GO:0034620) |
| 0.0 | 4.8 | GO:0016311 | dephosphorylation(GO:0016311) |
| 0.0 | 4.3 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.2 | 3.8 | GO:0009697 | salicylic acid biosynthetic process(GO:0009697) |
| 0.4 | 3.2 | GO:0010230 | alternative respiration(GO:0010230) |
| 0.4 | 3.2 | GO:0051410 | detoxification of nitrogen compound(GO:0051410) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.5 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.0 | 7.7 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 6.0 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 5.4 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.2 | 4.3 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.1 | 3.9 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.0 | 3.7 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.2 | 3.5 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.0 | 3.0 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.0 | 2.8 | GO:0005759 | mitochondrial matrix(GO:0005759) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 12.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 8.8 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.0 | 5.7 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.4 | 5.3 | GO:0003978 | UDP-glucose 4-epimerase activity(GO:0003978) |
| 0.0 | 5.3 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 4.3 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.0 | 4.3 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.0 | 4.0 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.1 | 3.7 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.3 | 3.4 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.3 | 1.3 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.1 | 0.9 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.1 | 0.6 | PID P73PATHWAY | p73 transcription factor network |
| 0.1 | 0.5 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.1 | 0.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.4 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
| 0.1 | 0.4 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.4 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.1 | 0.3 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.1 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.3 | 1.9 | REACTOME BILE ACID AND BILE SALT METABOLISM | Genes involved in Bile acid and bile salt metabolism |
| 0.1 | 0.9 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.2 | 0.7 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
| 0.2 | 0.7 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.0 | 0.7 | REACTOME ACTIVATION OF THE MRNA UPON BINDING OF THE CAP BINDING COMPLEX AND EIFS AND SUBSEQUENT BINDING TO 43S | Genes involved in Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S |
| 0.1 | 0.6 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.2 | 0.5 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.2 | 0.5 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.5 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |