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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G45680
Z-value: 1.16
Transcription factors associated with AT2G45680
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G45680
|
AT2G45680 | TCP family transcription factor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TCP9 | arTal_v1_Chr2_-_18821889_18821889 | -0.89 | 1.8e-10 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 8.34 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 7.91 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr2_-_17648945_17649062 Show fit | 7.06 |
AT2G42380.1
AT2G42380.4 AT2G42380.3 AT2G42380.2 AT2G42380.5 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 6.95 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr3_+_6510982_6510982 Show fit | 5.57 |
AT3G18890.1
|
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr4_+_12870006_12870008 Show fit | 4.49 |
AT4G25050.2
AT4G25050.1 |
acyl carrier protein 4 |
|
| arTal_v1_Chr1_+_3031046_3031046 Show fit | 4.04 |
AT1G09390.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr3_-_4042075_4042075 Show fit | 3.92 |
AT3G12710.1
|
DNA glycosylase superfamily protein |
|
| arTal_v1_Chr1_-_1768837_1768837 Show fit | 3.45 |
AT1G05850.2
AT1G05850.1 |
Chitinase family protein |
|
| arTal_v1_Chr1_-_6959148_6959148 Show fit | 3.42 |
AT1G20070.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G45680
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 16.3 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.0 | 14.2 | GO:0045893 | positive regulation of transcription, DNA-templated(GO:0045893) |
| 0.4 | 4.9 | GO:0007143 | female meiotic division(GO:0007143) |
| 0.4 | 4.6 | GO:0010413 | glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417) |
| 0.1 | 4.5 | GO:0042335 | cuticle development(GO:0042335) |
| 0.1 | 3.9 | GO:0006284 | base-excision repair(GO:0006284) |
| 0.6 | 3.6 | GO:1904961 | quiescent center organization(GO:1904961) |
| 0.2 | 3.5 | GO:0009641 | shade avoidance(GO:0009641) |
| 0.1 | 3.5 | GO:0019758 | S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761) |
| 0.2 | 3.4 | GO:0006032 | aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 13.1 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 11.4 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.2 | 5.6 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.0 | 3.5 | GO:0005874 | microtubule(GO:0005874) |
| 0.0 | 3.4 | GO:0048046 | apoplast(GO:0048046) |
| 0.4 | 2.5 | GO:0051233 | spindle midzone(GO:0051233) |
| 0.2 | 2.4 | GO:0031902 | late endosome membrane(GO:0031902) |
| 0.2 | 1.9 | GO:0005884 | actin filament(GO:0005884) |
| 0.4 | 1.6 | GO:0010330 | cellulose synthase complex(GO:0010330) |
| 0.1 | 1.1 | GO:0030125 | clathrin vesicle coat(GO:0030125) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 16.3 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.1 | 8.5 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 6.6 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.3 | 4.5 | GO:0051192 | ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process(GO:0000036) ACP phosphopantetheine attachment site binding(GO:0044620) prosthetic group binding(GO:0051192) |
| 0.4 | 3.9 | GO:0008725 | alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733) |
| 0.2 | 3.9 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.0 | 3.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 3.4 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.1 | 3.2 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.0 | 3.1 | GO:0008134 | transcription factor binding(GO:0008134) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.0 | PID NECTIN PATHWAY | Nectin adhesion pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.0 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |