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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G45420
Z-value: 2.36
Transcription factors associated with AT2G45420
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G45420
|
AT2G45420 | LOB domain-containing protein 18 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| LBD18 | arTal_v1_Chr2_+_18718348_18718348 | 0.11 | 5.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 12.57 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 11.67 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 11.09 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 10.97 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 10.73 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 9.57 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 9.56 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 9.55 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 9.19 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 9.11 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G45420
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 45.7 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 1.9 | 34.1 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.9 | 32.9 | GO:0042335 | cuticle development(GO:0042335) |
| 1.6 | 30.2 | GO:0006949 | syncytium formation(GO:0006949) |
| 1.2 | 28.7 | GO:0010207 | photosystem II assembly(GO:0010207) |
| 0.7 | 26.9 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
| 0.4 | 24.7 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.3 | 24.5 | GO:0015979 | photosynthesis(GO:0015979) |
| 1.0 | 24.1 | GO:0010020 | chloroplast fission(GO:0010020) plastid fission(GO:0043572) |
| 0.2 | 23.5 | GO:0080167 | response to karrikin(GO:0080167) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 141.1 | GO:0005576 | extracellular region(GO:0005576) |
| 0.4 | 120.0 | GO:0009579 | thylakoid(GO:0009579) |
| 0.2 | 100.4 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.4 | 86.9 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 1.0 | 66.2 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.4 | 59.5 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 1.0 | 55.7 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.3 | 32.2 | GO:0099512 | supramolecular fiber(GO:0099512) polymeric cytoskeletal fiber(GO:0099513) |
| 0.6 | 22.1 | GO:0010319 | stromule(GO:0010319) |
| 0.2 | 18.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 49.3 | GO:0005524 | ATP binding(GO:0005524) |
| 1.8 | 45.8 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.6 | 35.5 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.1 | 35.2 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.5 | 33.3 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 1.1 | 25.0 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.3 | 22.3 | GO:0043621 | protein self-association(GO:0043621) |
| 2.2 | 19.4 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 0.8 | 16.8 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 4.0 | 16.0 | GO:0050162 | oxalate oxidase activity(GO:0050162) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 5.8 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 1.3 | 5.1 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.8 | 4.7 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.6 | 4.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.7 | 3.0 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.7 | 2.2 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 2.1 | PID E2F PATHWAY | E2F transcription factor network |
| 0.4 | 1.6 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.3 | 1.3 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.4 | 0.8 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 20.6 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.5 | 7.3 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.7 | 5.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 1.3 | 5.1 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.8 | 3.1 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.9 | 2.8 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.3 | 2.5 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
| 0.4 | 2.2 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.4 | 2.2 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.4 | 2.0 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |