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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G45410
Z-value: 1.79
Transcription factors associated with AT2G45410
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G45410
|
AT2G45410 | LOB domain-containing protein 19 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| LBD19 | arTal_v1_Chr2_-_18713211_18713211 | 0.31 | 1.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 7.49 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 7.05 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 6.94 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 6.91 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr4_+_285876_285876 Show fit | 6.73 |
AT4G00700.2
AT4G00700.1 |
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 6.66 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr2_-_18077517_18077517 Show fit | 6.62 |
AT2G43570.1
|
chitinase |
|
| arTal_v1_Chr1_-_30053936_30053936 Show fit | 6.45 |
AT1G79900.1
|
Mitochondrial substrate carrier family protein |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 6.36 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr1_-_24433165_24433165 Show fit | 6.27 |
AT1G65690.1
|
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G45410
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 49.2 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 29.0 | GO:0030163 | protein catabolic process(GO:0030163) |
| 0.2 | 20.6 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 0.1 | 17.9 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.7 | 17.0 | GO:0009269 | response to desiccation(GO:0009269) |
| 1.2 | 15.9 | GO:0052317 | camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317) |
| 0.2 | 15.8 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.6 | 15.7 | GO:0071577 | zinc II ion transmembrane transport(GO:0071577) |
| 0.2 | 15.5 | GO:0009867 | jasmonic acid mediated signaling pathway(GO:0009867) |
| 0.3 | 13.0 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 120.0 | GO:0005634 | nucleus(GO:0005634) |
| 0.1 | 36.9 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.0 | 25.8 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.2 | 24.9 | GO:0000139 | Golgi membrane(GO:0000139) |
| 0.1 | 17.4 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.6 | 15.9 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.2 | 15.6 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.3 | 15.4 | GO:0005770 | late endosome(GO:0005770) |
| 0.1 | 14.9 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.2 | 13.4 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 32.8 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 28.6 | GO:0061659 | ubiquitin-like protein ligase activity(GO:0061659) |
| 0.1 | 26.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 26.1 | GO:0000976 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 15.8 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.2 | 15.7 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.2 | 13.7 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 0.2 | 12.6 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.3 | 12.5 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 1.1 | 11.3 | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity(GO:0008113) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 5.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.4 | 2.8 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.9 | 2.7 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.6 | 1.7 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.3 | 1.4 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.3 | 1.4 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.4 | 1.3 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.2 | 0.5 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.5 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.0 | 0.2 | PID SHP2 PATHWAY | SHP2 signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 7.3 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 1.5 | 4.6 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 4.6 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.7 | 4.0 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.5 | 3.4 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.4 | 2.9 | REACTOME RESOLUTION OF AP SITES VIA THE MULTIPLE NUCLEOTIDE PATCH REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the multiple-nucleotide patch replacement pathway |
| 0.3 | 2.5 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.8 | 2.4 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.4 | 2.1 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.4 | 1.7 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |