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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G43010
Z-value: 7.65
Transcription factors associated with AT2G43010
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G43010
|
AT2G43010 | phytochrome interacting factor 4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| PIF4 | arTal_v1_Chr2_+_17886101_17886101 | -0.32 | 1.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 54.22 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 50.55 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 47.86 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 43.06 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 42.66 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 42.39 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 41.53 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 40.97 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 40.35 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 40.09 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G43010
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 9.8 | 186.0 | GO:0006949 | syncytium formation(GO:0006949) |
| 13.0 | 169.6 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 2.4 | 146.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 7.6 | 83.7 | GO:0010196 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
| 5.0 | 80.0 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 2.9 | 77.7 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 1.4 | 75.5 | GO:0009740 | gibberellic acid mediated signaling pathway(GO:0009740) |
| 3.5 | 70.9 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 3.5 | 70.4 | GO:0046688 | response to copper ion(GO:0046688) |
| 1.0 | 68.1 | GO:0007018 | microtubule-based movement(GO:0007018) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 321.6 | GO:0005576 | extracellular region(GO:0005576) |
| 5.3 | 221.4 | GO:0010319 | stromule(GO:0010319) |
| 1.0 | 211.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 4.0 | 177.8 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 1.0 | 148.3 | GO:0099503 | secretory vesicle(GO:0099503) |
| 13.3 | 119.5 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.4 | 105.9 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.4 | 96.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.3 | 78.1 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.2 | 73.8 | GO:0009570 | chloroplast stroma(GO:0009570) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 5.0 | 160.1 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 3.6 | 119.2 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.9 | 115.4 | GO:0009055 | electron carrier activity(GO:0009055) |
| 4.0 | 92.5 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 3.6 | 90.1 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 6.2 | 80.0 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
| 2.7 | 70.1 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 23.0 | 69.0 | GO:0051738 | xanthophyll binding(GO:0051738) |
| 0.9 | 68.1 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 1.1 | 67.9 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 21.2 | 169.6 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 10.1 | 40.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 4.2 | 25.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 1.2 | 9.6 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 1.2 | 8.3 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
| 2.4 | 7.3 | PID AURORA A PATHWAY | Aurora A signaling |
| 1.7 | 5.1 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 28.3 | 169.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 2.5 | 40.2 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 4.4 | 13.2 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 3.0 | 11.9 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 1.4 | 6.8 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.3 | 1.9 | REACTOME SIGNALING BY ERBB4 | Genes involved in Signaling by ERBB4 |
| 0.1 | 0.2 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |