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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT2G43010

Z-value: 7.65

Transcription factors associated with AT2G43010

Gene Symbol Gene ID Gene Info
AT2G43010
AT2G43010 phytochrome interacting factor 4

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
PIF4arTal_v1_Chr2_+_17886101_17886101-0.321.0e-01Click!

Activity profile of AT2G43010 motif

Sorted Z-values of AT2G43010 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_-_4312103 54.22 AT2G10940.2
AT2G10940.1
AT2G10940
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_+_10255906 50.55 AT3G27690.2
AT3G27690.1
LHCB2.3
photosystem II light harvesting complex protein 2.3
Chr2_-_16950705 47.86 AT2G40610.1
EXPA8
expansin A8
Chr3_-_197974 43.06 AT3G01500.1
CA1
carbonic anhydrase 1
Chr3_-_198160 42.66 AT3G01500.2
CA1
carbonic anhydrase 1
Chr3_-_198664 42.39 AT3G01500.3
CA1
carbonic anhydrase 1
Chr3_-_197564 41.53 AT3G01500.4
CA1
carbonic anhydrase 1
Chr4_-_17777445 40.97 AT4G37800.1
XTH7
xyloglucan endotransglucosylase/hydrolase 7
Chr1_-_4090857 40.35 AT1G12090.1
ELP
extensin-like protein
Chr5_+_8863224 40.09 AT5G25460.1
DGR2
transmembrane protein, putative (Protein of unknown function, DUF642)
Chr1_+_6612630 38.10 AT1G19150.1
Lhca6
PSI type II chlorophyll a/b-binding protein (Lhca2*1)
Chr5_+_17712203 37.41 AT5G44020.1
AT5G44020
HAD superfamily, subfamily IIIB acid phosphatase
Chr3_-_21523375 35.34 AT3G58120.2
AT3G58120.1
BZIP61
Basic-leucine zipper (bZIP) transcription factor family protein
Chr1_+_28053030 35.02 AT1G74670.1
GASA6
Gibberellin-regulated family protein
Chr2_+_9844134 34.90 AT2G23130.1
AT2G23130.2
AGP17
arabinogalactan protein 17
Chr4_-_7493080 34.19 AT4G12730.1
FLA2
FASCICLIN-like arabinogalactan 2
Chr1_+_10371675 33.81 AT1G29660.1
AT1G29660
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_+_625254 33.09 AT5G02760.1
AT5G02760
Protein phosphatase 2C family protein
Chr1_-_20648891 33.04 AT1G55330.1
AGP21
arabinogalactan protein 21
Chr4_-_12400231 31.66 AT4G23820.1
AT4G23820
Pectin lyase-like superfamily protein
Chr3_-_4008018 31.06 AT3G12610.1
DRT100
Leucine-rich repeat (LRR) family protein
Chr1_-_27340044 30.08 AT1G72610.1
GER1
germin-like protein 1
Chr2_+_8940833 29.45 AT2G20750.2
AT2G20750.1
EXPB1
expansin B1
Chr1_-_6999839 28.93 AT1G20190.1
EXPA11
expansin 11
Chr2_-_15474717 28.64 AT2G36870.2
AT2G36870.1
XTH32
xyloglucan endotransglucosylase/hydrolase 32
Chr5_+_5237970 28.60 AT5G16030.1
AT5G16030.4
AT5G16030.2
AT5G16030.3
AT5G16030
mental retardation GTPase activating protein
Chr1_+_26141726 28.45 AT1G69530.2
AT1G69530.1
AT1G69530.3
AT1G69530.5
AT1G69530.4
EXPA1
expansin A1
Chr1_-_7043392 28.15 AT1G20340.1
DRT112
Cupredoxin superfamily protein
Chr5_+_5983683 27.65 AT5G18080.1
SAUR24
SAUR-like auxin-responsive protein family
Chr2_-_12433796 27.64 AT2G28950.1
EXPA6
expansin A6
Chr2_-_9428170 27.59 AT2G22170.1
PLAT2
Lipase/lipooxygenase, PLAT/LH2 family protein
Chr1_-_983544 27.43 AT1G03870.1
FLA9
FASCICLIN-like arabinoogalactan 9
Chr5_-_4171954 27.38 AT5G13140.1
AT5G13140
Pollen Ole e 1 allergen and extensin family protein
Chr1_+_11532199 27.30 AT1G32060.1
PRK
phosphoribulokinase
Chr2_+_15059763 27.10 AT2G35860.1
FLA16
FASCICLIN-like arabinogalactan protein 16 precursor
Chr3_-_977474 27.05 AT3G03820.1
SAUR29
SAUR-like auxin-responsive protein family
Chr1_-_6999523 26.89 AT1G20190.2
EXPA11
expansin 11
Chr5_-_8707885 26.53 AT5G25190.1
ESE3
Integrase-type DNA-binding superfamily protein
Chr2_-_15137012 26.32 AT2G36050.1
OFP15
ovate family protein 15
Chr3_-_8589754 26.19 AT3G23810.1
SAHH2
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr5_-_5966785 26.18 AT5G18020.1
SAUR20
SAUR-like auxin-responsive protein family
Chr2_+_19243348 26.03 AT2G46820.1
AT2G46820.2
PSI-P
photosystem I P subunit
Chr5_-_6976036 25.56 AT5G20630.1
GER3
germin 3
Chr1_+_898480 25.46 AT1G03600.1
PSB27
photosystem II family protein
Chr5_+_5238502 25.43 AT5G16030.5
AT5G16030
mental retardation GTPase activating protein
Chr2_+_13647699 24.88 AT2G32100.1
OFP16
ovate family protein 16
Chr1_+_5058583 24.82 AT1G14700.4
AT1G14700.1
AT1G14700.3
AT1G14700.2
PAP3
purple acid phosphatase 3
Chr2_-_15790139 24.66 AT2G37640.1
EXP3
Barwin-like endoglucanases superfamily protein
Chr4_-_16583075 24.64 AT4G34760.1
AT4G34760
SAUR-like auxin-responsive protein family
Chr2_-_15789605 24.56 AT2G37640.2
EXP3
Barwin-like endoglucanases superfamily protein
Chr1_+_3015237 24.44 AT1G09340.2
AT1G09340.1
CRB
chloroplast RNA binding protein
Chr1_+_25401514 23.94 AT1G67750.1
AT1G67750
Pectate lyase family protein
Chr1_+_10321011 23.89 AT1G29500.1
AT1G29500
SAUR-like auxin-responsive protein family
Chr4_+_14149849 23.78 AT4G28660.1
AT4G28660.2
PSB28
photosystem II reaction center PSB28 protein
Chr1_+_3664187 23.60 AT1G10960.1
FD1
ferredoxin 1
Chr5_+_4944816 23.48 AT5G15230.1
GASA4
GAST1 protein homolog 4
Chr4_+_9556783 23.47 AT4G16980.1
AT4G16980
arabinogalactan-protein family
Chr5_+_2680401 23.32 AT5G08330.1
TCP11
TCP family transcription factor
Chr1_+_4899045 23.27 AT1G14345.1
AT1G14345
NAD(P)-linked oxidoreductase superfamily protein
Chr1_-_28554810 23.26 AT1G76100.1
AT1G76100.2
PETE1
plastocyanin 1
Chr3_-_2130451 23.17 AT3G06750.1
AT3G06750
hydroxyproline-rich glycoprotein family protein
Chr1_+_16871696 23.09 AT1G44575.2
NPQ4
Chlorophyll A-B binding family protein
Chr1_+_16871511 23.04 AT1G44575.3
NPQ4
Chlorophyll A-B binding family protein
Chr1_-_26515188 23.03 AT1G70370.2
AT1G70370.1
PG2
polygalacturonase 2
Chr3_+_2717557 22.96 AT3G08940.2
AT3G08940.1
LHCB4.2
light harvesting complex photosystem II
Chr5_+_19825078 22.94 AT5G48900.1
AT5G48900
Pectin lyase-like superfamily protein
Chr1_-_28603932 22.89 AT1G76240.1
AT1G76240
DUF241 domain protein (DUF241)
Chr1_+_16870221 22.85 AT1G44575.1
NPQ4
Chlorophyll A-B binding family protein
Chr1_+_418726 22.73 AT1G02205.4
AT1G02205.3
AT1G02205.5
AT1G02205.1
CER1
Fatty acid hydroxylase superfamily
Chr1_-_3880391 22.48 AT1G11545.1
XTH8
xyloglucan endotransglucosylase/hydrolase 8
Chr5_+_5968352 22.38 AT5G18030.1
AT5G18030
SAUR-like auxin-responsive protein family
Chr3_+_2563803 22.37 AT3G08030.1
AT3G08030
DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
Chr1_-_6940832 22.36 AT1G20010.1
TUB5
tubulin beta-5 chain
Chr3_+_188321 22.22 AT3G01480.1
AT3G01480.2
CYP38
cyclophilin 38
Chr5_-_24990331 22.22 AT5G62220.1
GT18
glycosyltransferase 18
Chr4_+_12876822 22.20 AT4G25080.6
AT4G25080.5
AT4G25080.2
AT4G25080.1
AT4G25080.3
AT4G25080.4
CHLM
magnesium-protoporphyrin IX methyltransferase
Chr3_+_2564153 22.15 AT3G08030.2
AT3G08030
DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
Chr5_-_990630 21.91 AT5G03760.1
ATCSLA09
Nucleotide-diphospho-sugar transferases superfamily protein
Chr2_-_16908152 21.71 AT2G40475.1
ASG8
hypothetical protein
Chr1_+_23911024 21.66 AT1G64390.1
GH9C2
glycosyl hydrolase 9C2
Chr5_-_2185972 21.66 AT5G07030.1
AT5G07030
Eukaryotic aspartyl protease family protein
Chr5_+_4945062 21.30 AT5G15230.2
GASA4
GAST1 protein homolog 4
Chr5_-_1293723 21.27 AT5G04530.1
KCS19
3-ketoacyl-CoA synthase 19
Chr1_+_29117500 21.24 AT1G77490.1
AT1G77490.2
TAPX
thylakoidal ascorbate peroxidase
Chr1_+_7696427 21.07 AT1G21910.1
DREB26
Integrase-type DNA-binding superfamily protein
Chr5_+_18945543 20.97 AT5G46690.2
AT5G46690.1
bHLH071
beta HLH protein 71
Chr3_+_22902491 20.96 AT3G61870.1
AT3G61870.2
AT3G61870
plant/protein
Chr4_-_17181261 20.76 AT4G36360.2
BGAL3
beta-galactosidase 3
Chr4_-_14204061 20.66 AT4G28750.1
PSAE-1
Photosystem I reaction centre subunit IV / PsaE protein
Chr4_-_17181466 20.64 AT4G36360.1
BGAL3
beta-galactosidase 3
Chr1_+_1136078 20.63 AT1G04250.1
AXR3
AUX/IAA transcriptional regulator family protein
Chr3_-_6436046 20.62 AT3G18710.1
PUB29
plant U-box 29
Chr3_-_5252697 20.53 AT3G15520.1
AT3G15520.2
AT3G15520.3
AT3G15520
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr5_+_5975780 20.50 AT5G18060.1
SAUR23
SAUR-like auxin-responsive protein family
Chr1_+_12026936 20.46 AT1G33170.1
AT1G33170
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_+_4956349 20.46 AT3G14760.1
AT3G14760
transmembrane protein
Chr5_-_2182538 20.44 AT5G07020.1
AT5G07020
proline-rich family protein
Chr5_-_5963405 20.13 AT5G18010.1
SAUR19
SAUR-like auxin-responsive protein family
Chr5_-_5072492 20.12 AT5G15580.1
LNG1
longifolia1
Chr4_-_16384468 20.10 AT4G34220.1
AT4G34220
Leucine-rich repeat protein kinase family protein
Chr3_-_18628888 19.96 AT3G50240.3
AT3G50240.2
AT3G50240.4
AT3G50240.1
KICP-02
ATP binding microtubule motor family protein
Chr3_-_219104 19.96 AT3G01550.2
AT3G01550.1
PPT2
phosphoenolpyruvate (pep)/phosphate translocator 2
Chr4_-_1114151 19.83 AT4G02530.1
AT4G02530.2
AT4G02530.3
AT4G02530
chloroplast thylakoid lumen protein
Chr5_-_23406479 19.81 AT5G57780.1
P1R1
transcription factor
Chr3_-_5433851 19.75 AT3G16000.1
MFP1
MAR binding filament-like protein 1
Chr3_-_20142763 19.71 AT3G54400.1
AT3G54400
Eukaryotic aspartyl protease family protein
Chr1_-_10306587 19.57 AT1G29450.2
AT1G29450.1
AT1G29450
SAUR-like auxin-responsive protein family
Chr4_+_9906821 19.55 AT4G17810.1
AT4G17810.2
AT4G17810
C2H2 and C2HC zinc fingers superfamily protein
Chr3_+_11252807 19.52 AT3G29320.1
PHS1
Glycosyl transferase, family 35
Chr5_-_5975087 19.49 AT5G18050.1
SAUR22
SAUR-like auxin-responsive protein family
Chr1_-_24023424 19.45 AT1G64640.1
ENODL8
early nodulin-like protein 8
Chr5_+_15421573 19.27 AT5G38520.2
AT5G38520
alpha/beta-Hydrolases superfamily protein
Chr5_+_15421289 19.19 AT5G38520.1
AT5G38520
alpha/beta-Hydrolases superfamily protein
Chr5_+_25016860 19.10 AT5G62280.1
AT5G62280
DUF1442 family protein (DUF1442)
Chr1_+_17867102 19.02 AT1G48350.1
EMB3105
Ribosomal L18p/L5e family protein
Chr3_+_22745514 18.95 AT3G61470.1
LHCA2
photosystem I light harvesting complex protein
Chr3_-_9723904 18.89 AT3G26520.1
TIP2
tonoplast intrinsic protein 2
Chr1_-_11548016 18.84 AT1G32100.1
PRR1
pinoresinol reductase 1
Chr4_-_14872267 18.80 AT4G30410.1
AT4G30410.2
AT4G30410
sequence-specific DNA binding transcription factor
Chr3_-_22322661 18.77 AT3G60390.1
HAT3
homeobox-leucine zipper protein 3
Chr4_-_8350030 18.62 AT4G14550.4
IAA14
indole-3-acetic acid inducible 14
Chr4_+_14192569 18.56 AT4G28720.1
YUC8
Flavin-binding monooxygenase family protein
Chr5_+_1130031 18.44 AT5G04140.2
GLU1
glutamate synthase 1
Chr5_+_1129785 18.42 AT5G04140.1
GLU1
glutamate synthase 1
Chr5_+_5431584 18.21 AT5G16590.1
AT5G16590
Leucine-rich repeat protein kinase family protein
Chr5_-_19939797 17.93 AT5G49170.1
AT5G49170
hypothetical protein
Chr2_+_12014412 17.92 AT2G28190.1
CSD2
copper/zinc superoxide dismutase 2
Chr5_+_15703078 17.91 AT5G39210.1
CRR7
chlororespiratory reduction 7
Chr2_-_17837618 17.72 AT2G42870.1
PAR1
phy rapidly regulated 1
Chr4_-_2673243 17.68 AT4G05180.1
AT4G05180.2
PSBQ-2
photosystem II subunit Q-2
Chr5_+_15957368 17.68 AT5G39860.1
PRE1
basic helix-loop-helix (bHLH) DNA-binding family protein
Chr1_+_418416 17.50 AT1G02205.2
CER1
Fatty acid hydroxylase superfamily
Chr2_+_6399621 17.46 AT2G14890.2
AGP9
arabinogalactan protein 9
Chr1_-_754262 17.44 AT1G03130.1
PSAD-2
photosystem I subunit D-2
Chr4_+_8883825 17.36 AT4G15560.1
CLA1
Deoxyxylulose-5-phosphate synthase
Chr3_-_5271984 17.34 AT3G15570.1
AT3G15570
Phototropic-responsive NPH3 family protein
Chr4_-_8350263 17.31 AT4G14550.1
AT4G14550.2
AT4G14550.3
IAA14
indole-3-acetic acid inducible 14
Chr1_-_24033600 17.27 AT1G64670.1
AT1G64670.3
AT1G64670.2
BDG1
alpha/beta-Hydrolases superfamily protein
Chr1_-_6421188 17.07 AT1G18650.1
AT1G18650.2
PDCB3
plasmodesmata callose-binding protein 3
Chr3_+_981072 16.93 AT3G03840.1
SAUR27
SAUR-like auxin-responsive protein family
Chr4_+_17643110 16.91 AT4G37550.4
AT4G37550.1
AT4G37550.2
AT4G37550
Acetamidase/Formamidase family protein
Chr5_-_4430901 16.90 AT5G13730.1
SIG4
sigma factor 4
Chr5_+_463073 16.80 AT5G02260.1
EXPA9
expansin A9
Chr5_+_26572265 16.79 AT5G66580.1
AT5G66580
hypothetical protein
Chr1_+_24035941 16.78 AT1G64680.1
AT1G64680.2
AT1G64680
beta-carotene isomerase D27
Chr5_+_733887 16.78 AT5G03120.1
AT5G03120.2
AT5G03120
transmembrane protein
Chr2_+_14849357 16.78 AT2G35260.1
AT2G35260
CAAX protease self-immunity protein
Chr5_-_2173015 16.73 AT5G07000.1
ST2B
sulfotransferase 2B
Chr4_+_8360996 16.72 AT4G14560.1
IAA1
indole-3-acetic acid inducible
Chr5_+_26573964 16.71 AT5G66590.1
AT5G66590
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr3_+_10505711 16.63 AT3G28180.1
CSLC04
Cellulose-synthase-like C4
Chr3_-_22881775 16.57 AT3G61820.1
AT3G61820
Eukaryotic aspartyl protease family protein
Chr4_+_17643548 16.55 AT4G37550.6
AT4G37550.3
AT4G37550
Acetamidase/Formamidase family protein
Chr3_+_21109414 16.49 AT3G57040.1
ARR9
response regulator 9
Chr2_-_19622251 16.49 AT2G47940.2
AT2G47940.1
DEG2
DEGP protease 2
Chr2_-_12785037 16.48 AT2G29980.2
FAD3
fatty acid desaturase 3
Chr1_+_6460598 16.45 AT1G18730.3
AT1G18730.2
AT1G18730.4
PnsB4
NDH dependent flow 6
Chr4_-_18125559 16.39 AT4G38840.1
AT4G38840
SAUR-like auxin-responsive protein family
Chr1_+_26439556 16.37 AT1G70210.1
CYCD1%3B1
CYCLIN D1;1
Chr1_+_17065858 16.33 AT1G45130.2
BGAL5
beta-galactosidase 5
Chr2_-_12785190 16.25 AT2G29980.1
FAD3
fatty acid desaturase 3
Chr4_-_16773456 16.25 AT4G35250.1
HCF244
NAD(P)-binding Rossmann-fold superfamily protein
Chr2_-_183639 16.19 AT2G01420.3
AT2G01420.1
AT2G01420.2
PIN4
Auxin efflux carrier family protein
Chr3_+_19930798 16.16 AT3G53800.1
AT3G53800.2
Fes1B
Fes1B
Chr3_-_5252506 16.08 AT3G15520.4
AT3G15520
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr1_+_5224294 16.02 AT1G15180.1
AT1G15180.2
AT1G15180
MATE efflux family protein
Chr2_+_19492867 16.01 AT2G47500.1
AT2G47500.2
AT2G47500
P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein
Chr5_+_8042853 15.97 AT5G23860.1
AT5G23860.2
TUB8
tubulin beta 8
Chr4_+_16591179 15.92 AT4G34770.1
AT4G34770
SAUR-like auxin-responsive protein family
Chr2_+_6399405 15.91 AT2G14890.1
AGP9
arabinogalactan protein 9
Chr1_-_10308163 15.90 AT1G29460.1
AT1G29460.2
AT1G29460
SAUR-like auxin-responsive protein family
Chr1_-_1940463 15.85 AT1G06360.1
AT1G06360.2
AT1G06360
Fatty acid desaturase family protein
Chr4_+_11663186 15.82 AT4G22010.1
sks4
SKU5 similar 4
Chr5_+_20900859 15.82 AT5G51460.1
AT5G51460.4
ATTPPA
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr3_+_21109059 15.80 AT3G57040.2
ARR9
response regulator 9
Chr2_+_15934244 15.76 AT2G38080.1
IRX12
Laccase/Diphenol oxidase family protein
Chr2_+_8059106 15.75 AT2G18560.1
AT2G18560
UDP-Glycosyltransferase superfamily protein
Chr1_+_17065111 15.74 AT1G45130.1
BGAL5
beta-galactosidase 5
Chr4_+_18126057 15.73 AT4G38850.1
SAUR15
SAUR-like auxin-responsive protein family
Chr1_-_19978048 15.70 AT1G53520.1
FAP3
Chalcone-flavanone isomerase family protein
Chr5_-_3278461 15.63 AT5G10430.1
AGP4
arabinogalactan protein 4
Chr1_-_29643535 15.58 AT1G78850.1
AT1G78850
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Chr3_-_2175686 15.57 AT3G06880.1
AT3G06880.5
AT3G06880.4
AT3G06880.3
AT3G06880.2
AT3G06880
Transducin/WD40 repeat-like superfamily protein
Chr1_+_1843463 15.56 AT1G06080.1
AT1G06080.2
ADS1
delta 9 desaturase 1
Chr5_+_7529292 15.56 AT5G22640.3
AT5G22640.1
AT5G22640.2
emb1211
MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein
Chr3_-_8533834 15.48 AT3G23700.1
AT3G23700
Nucleic acid-binding proteins superfamily
Chr3_+_983057 15.44 AT3G03850.1
SAUR26
SAUR-like auxin-responsive protein family
Chr1_+_26093026 15.40 AT1G69420.2
AT1G69420.1
AT1G69420
DHHC-type zinc finger family protein
Chr2_+_9259511 15.31 AT2G21650.1
MEE3
Homeodomain-like superfamily protein
Chr4_+_8470179 15.25 AT4G14750.2
AT4G14750.3
AT4G14750.1
IQD19
IQ-domain 19
Chr1_+_28327698 15.23 AT1G75460.1
AT1G75460
ATP-dependent protease La (LON) domain protein
Chr5_+_20902087 15.21 AT5G51460.2
ATTPPA
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr4_+_17643335 15.18 AT4G37550.5
AT4G37550
Acetamidase/Formamidase family protein
Chr1_-_6959148 15.14 AT1G20070.1
AT1G20070
hypothetical protein
Chr5_-_24640639 15.10 AT5G61270.3
AT5G61270.1
AT5G61270.2
PIF7
phytochrome-interacting factor7
Chr5_+_17550179 15.06 AT5G43700.1
ATAUX2-11
AUX/IAA transcriptional regulator family protein
Chr1_-_29647691 15.00 AT1G78860.1
AT1G78860
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Chr4_+_12086898 14.98 AT4G23060.1
IQD22
IQ-domain 22
Chr4_+_15583332 14.98 AT4G32280.1
AT4G32280.2
AT4G32280.3
IAA29
indole-3-acetic acid inducible 29
Chr4_+_18130237 14.97 AT4G38860.1
AT4G38860
SAUR-like auxin-responsive protein family

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G43010

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
13.0 169.6 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
10.3 41.3 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
9.9 29.7 GO:0042353 fucose biosynthetic process(GO:0042353)
9.8 186.0 GO:0006949 syncytium formation(GO:0006949)
8.4 50.5 GO:1903428 photosynthesis, light harvesting in photosystem II(GO:0009769) positive regulation of reactive oxygen species biosynthetic process(GO:1903428)
7.9 23.6 GO:0071461 cellular response to redox state(GO:0071461)
7.6 45.8 GO:0009650 UV protection(GO:0009650)
7.6 83.7 GO:0010196 nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066)
7.1 28.6 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
6.7 40.2 GO:0043447 alkane biosynthetic process(GO:0043447)
6.0 17.9 GO:0071457 cellular response to ozone(GO:0071457)
6.0 17.9 GO:0010275 NAD(P)H dehydrogenase complex assembly(GO:0010275)
5.8 23.2 GO:0033353 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
5.2 15.6 GO:0010198 synergid death(GO:0010198)
5.0 45.1 GO:0051513 regulation of monopolar cell growth(GO:0051513)
5.0 80.0 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
5.0 20.0 GO:0015714 phosphoenolpyruvate transport(GO:0015714)
4.4 17.4 GO:0050891 regulation of body fluid levels(GO:0050878) multicellular organismal water homeostasis(GO:0050891)
4.3 4.3 GO:0090355 positive regulation of auxin metabolic process(GO:0090355)
4.1 12.4 GO:0006658 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
4.0 19.8 GO:0019745 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
3.9 19.5 GO:0005980 glycogen catabolic process(GO:0005980)
3.9 19.3 GO:0046713 borate transport(GO:0046713)
3.8 42.0 GO:0010206 photosystem II repair(GO:0010206)
3.8 18.8 GO:0009806 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
3.8 11.3 GO:1990532 stress response to nickel ion(GO:1990532)
3.5 70.9 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
3.5 70.4 GO:0046688 response to copper ion(GO:0046688)
3.5 10.4 GO:0080051 cutin transport(GO:0080051)
3.3 19.7 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
3.2 12.9 GO:0016139 glycoside catabolic process(GO:0016139)
3.1 9.4 GO:0009831 plant-type cell wall modification involved in multidimensional cell growth(GO:0009831)
3.0 21.2 GO:0071588 hydrogen peroxide mediated signaling pathway(GO:0071588)
2.9 8.8 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
2.9 2.9 GO:1901881 positive regulation of protein depolymerization(GO:1901881)
2.9 5.8 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
2.9 40.5 GO:0030307 positive regulation of cell growth(GO:0030307)
2.9 77.7 GO:0009828 plant-type cell wall loosening(GO:0009828)
2.8 28.3 GO:0043155 photoinhibition(GO:0010205) negative regulation of photosynthesis, light reaction(GO:0043155)
2.7 8.0 GO:0043953 protein transport by the Tat complex(GO:0043953)
2.6 62.8 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
2.6 13.1 GO:0009647 skotomorphogenesis(GO:0009647)
2.6 7.8 GO:0042817 pyridoxal metabolic process(GO:0042817)
2.6 7.8 GO:0090227 regulation of red or far-red light signaling pathway(GO:0090227)
2.5 10.0 GO:0006808 regulation of nitrogen utilization(GO:0006808)
2.5 17.3 GO:1902584 positive regulation of response to water deprivation(GO:1902584)
2.4 7.3 GO:0060236 regulation of mitotic spindle organization(GO:0060236) regulation of spindle organization(GO:0090224)
2.4 146.2 GO:0010411 xyloglucan metabolic process(GO:0010411)
2.4 12.1 GO:0090116 C-5 methylation of cytosine(GO:0090116)
2.4 12.1 GO:0035627 ceramide transport(GO:0035627)
2.4 14.4 GO:0009263 deoxyribonucleotide biosynthetic process(GO:0009263)
2.4 9.5 GO:0019586 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
2.3 9.1 GO:0002943 tRNA dihydrouridine synthesis(GO:0002943)
2.2 6.5 GO:0006471 protein ADP-ribosylation(GO:0006471) protein poly-ADP-ribosylation(GO:0070212)
2.1 27.3 GO:0015977 carbon fixation(GO:0015977) reductive pentose-phosphate cycle(GO:0019253)
2.1 33.2 GO:0010600 regulation of auxin biosynthetic process(GO:0010600)
2.0 24.4 GO:0032544 plastid translation(GO:0032544)
2.0 6.0 GO:0034389 lipid particle organization(GO:0034389)
2.0 21.5 GO:0080086 stamen filament development(GO:0080086)
1.9 7.8 GO:0046168 glycerol-3-phosphate catabolic process(GO:0046168)
1.8 12.9 GO:0015837 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
1.8 9.1 GO:0019336 phenol-containing compound catabolic process(GO:0019336)
1.8 9.1 GO:0031022 nuclear migration along microfilament(GO:0031022)
1.8 7.2 GO:1902448 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
1.8 62.1 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
1.7 8.6 GO:0060631 regulation of meiosis I(GO:0060631)
1.7 12.0 GO:0006565 L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482)
1.7 23.7 GO:0009641 shade avoidance(GO:0009641)
1.7 20.0 GO:1900056 negative regulation of leaf senescence(GO:1900056)
1.7 13.3 GO:0009854 oxidative photosynthetic carbon pathway(GO:0009854)
1.6 11.2 GO:0090057 root radial pattern formation(GO:0090057)
1.6 4.7 GO:1901031 regulation of response to reactive oxygen species(GO:1901031)
1.6 17.4 GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0019288)
1.6 15.7 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
1.6 4.7 GO:1900386 positive regulation of flavonol biosynthetic process(GO:1900386)
1.5 4.6 GO:2001009 regulation of plant-type cell wall cellulose biosynthetic process(GO:2001009)
1.4 46.3 GO:0005992 trehalose biosynthetic process(GO:0005992)
1.4 75.5 GO:0009740 gibberellic acid mediated signaling pathway(GO:0009740)
1.4 11.1 GO:0010239 chloroplast mRNA processing(GO:0010239)
1.4 26.3 GO:0010207 photosystem II assembly(GO:0010207)
1.4 8.2 GO:0019408 dolichol biosynthetic process(GO:0019408)
1.3 20.1 GO:0006782 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
1.3 6.6 GO:1903960 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
1.3 9.2 GO:0070979 protein K11-linked ubiquitination(GO:0070979)
1.3 7.8 GO:0071586 CAAX-box protein processing(GO:0071586) CAAX-box protein maturation(GO:0080120)
1.3 5.1 GO:0045682 regulation of epithelial cell differentiation(GO:0030856) regulation of epidermal cell differentiation(GO:0045604) regulation of epidermis development(GO:0045682)
1.3 5.0 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
1.2 1.2 GO:0042814 monopolar cell growth(GO:0042814)
1.2 17.2 GO:0006265 DNA topological change(GO:0006265)
1.2 4.7 GO:0046416 D-amino acid metabolic process(GO:0046416)
1.1 4.4 GO:0010623 programmed cell death involved in cell development(GO:0010623)
1.1 14.0 GO:0070828 heterochromatin organization(GO:0070828)
1.0 13.6 GO:0048766 root hair initiation(GO:0048766)
1.0 8.3 GO:0071491 cellular response to red light(GO:0071491)
1.0 5.2 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
1.0 5.2 GO:1902767 farnesyl diphosphate biosynthetic process, mevalonate pathway(GO:0010142) isoprenoid biosynthetic process via mevalonate(GO:1902767)
1.0 14.4 GO:0009827 plant-type cell wall modification(GO:0009827)
1.0 6.0 GO:0006228 UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051)
1.0 20.0 GO:0009638 phototropism(GO:0009638)
1.0 21.9 GO:0009292 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
1.0 10.8 GO:0051985 mitotic spindle assembly checkpoint(GO:0007094) spindle checkpoint(GO:0031577) negative regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032435) negative regulation of sister chromatid segregation(GO:0033046) negative regulation of mitotic sister chromatid segregation(GO:0033048) negative regulation of mitotic metaphase/anaphase transition(GO:0045841) negative regulation of chromosome segregation(GO:0051985) spindle assembly checkpoint(GO:0071173) mitotic spindle checkpoint(GO:0071174) negative regulation of proteasomal protein catabolic process(GO:1901799) negative regulation of metaphase/anaphase transition of cell cycle(GO:1902100) negative regulation of proteolysis involved in cellular protein catabolic process(GO:1903051) negative regulation of cellular protein catabolic process(GO:1903363) negative regulation of mitotic sister chromatid separation(GO:2000816)
1.0 68.1 GO:0007018 microtubule-based movement(GO:0007018)
1.0 33.9 GO:0000038 very long-chain fatty acid metabolic process(GO:0000038)
1.0 8.6 GO:0010358 leaf shaping(GO:0010358)
0.9 2.8 GO:0051101 regulation of DNA binding(GO:0051101)
0.9 17.7 GO:0009767 photosynthetic electron transport chain(GO:0009767)
0.9 12.1 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.9 4.6 GO:0007266 Rho protein signal transduction(GO:0007266)
0.9 16.2 GO:0048829 root cap development(GO:0048829)
0.9 3.6 GO:0022615 protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)
0.8 4.2 GO:0008295 spermidine biosynthetic process(GO:0008295)
0.8 2.5 GO:0035019 somatic stem cell population maintenance(GO:0035019)
0.8 10.1 GO:0009704 de-etiolation(GO:0009704)
0.8 4.9 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.8 14.9 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.8 12.5 GO:0007584 response to nutrient(GO:0007584)
0.7 7.4 GO:0045492 xylan biosynthetic process(GO:0045492)
0.7 28.8 GO:0010114 response to red light(GO:0010114)
0.7 61.9 GO:0045490 pectin catabolic process(GO:0045490)
0.7 13.3 GO:0006521 regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238)
0.7 2.9 GO:0090603 sieve element differentiation(GO:0090603)
0.7 8.6 GO:0009089 lysine biosynthetic process(GO:0009085) lysine biosynthetic process via diaminopimelate(GO:0009089) diaminopimelate metabolic process(GO:0046451)
0.7 10.2 GO:0001709 cell fate determination(GO:0001709)
0.7 7.5 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.7 15.5 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.7 4.6 GO:0009187 cyclic nucleotide metabolic process(GO:0009187)
0.6 5.1 GO:0006821 chloride transport(GO:0006821)
0.6 22.2 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.6 27.1 GO:0016145 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.6 10.3 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.6 2.9 GO:1901703 protein localization involved in auxin polar transport(GO:1901703)
0.6 3.5 GO:0048533 sporocyte differentiation(GO:0048533)
0.6 2.3 GO:0071836 nectar secretion(GO:0071836)
0.6 2.3 GO:0006065 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
0.6 21.6 GO:0048506 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.5 2.7 GO:0098657 import into cell(GO:0098657)
0.5 38.9 GO:0009627 systemic acquired resistance(GO:0009627)
0.5 14.8 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.5 7.3 GO:0010274 hydrotropism(GO:0010274)
0.5 3.0 GO:0009643 photosynthetic acclimation(GO:0009643)
0.5 7.0 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.5 4.4 GO:0033517 myo-inositol hexakisphosphate biosynthetic process(GO:0010264) myo-inositol hexakisphosphate metabolic process(GO:0033517)
0.5 7.2 GO:0006574 valine catabolic process(GO:0006574)
0.5 36.8 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.5 44.3 GO:0080167 response to karrikin(GO:0080167)
0.5 13.2 GO:0030050 vesicle transport along actin filament(GO:0030050) cytoskeleton-dependent intracellular transport(GO:0030705) actin filament-based transport(GO:0099515) vesicle cytoskeletal trafficking(GO:0099518)
0.4 7.1 GO:0048826 cotyledon morphogenesis(GO:0048826)
0.4 3.9 GO:0009652 thigmotropism(GO:0009652)
0.4 6.0 GO:0045338 farnesyl diphosphate metabolic process(GO:0045338)
0.4 11.9 GO:0006476 protein deacetylation(GO:0006476)
0.4 4.5 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.4 11.7 GO:0010027 thylakoid membrane organization(GO:0010027)
0.4 7.4 GO:0008285 negative regulation of cell proliferation(GO:0008285)
0.4 1.1 GO:0048833 specification of organ number(GO:0048832) specification of floral organ number(GO:0048833)
0.4 2.8 GO:0009819 drought recovery(GO:0009819)
0.3 9.6 GO:0009251 glucan catabolic process(GO:0009251)
0.3 8.8 GO:0050826 response to freezing(GO:0050826)
0.3 4.2 GO:0008356 asymmetric cell division(GO:0008356)
0.3 6.6 GO:0008284 positive regulation of cell proliferation(GO:0008284)
0.3 15.0 GO:0061077 chaperone-mediated protein folding(GO:0061077)
0.3 8.3 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.3 37.1 GO:0000226 microtubule cytoskeleton organization(GO:0000226)
0.3 10.9 GO:0022611 seed dormancy process(GO:0010162) dormancy process(GO:0022611)
0.3 15.2 GO:0010101 post-embryonic root morphogenesis(GO:0010101) lateral root morphogenesis(GO:0010102)
0.3 3.7 GO:0009695 jasmonic acid biosynthetic process(GO:0009695)
0.3 10.1 GO:0071805 cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805)
0.3 2.5 GO:0048359 mucilage metabolic process involved in seed coat development(GO:0048359)
0.3 6.8 GO:0048825 cotyledon development(GO:0048825)
0.3 2.7 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.3 8.6 GO:0016126 sterol biosynthetic process(GO:0016126)
0.3 4.5 GO:0019853 L-ascorbic acid biosynthetic process(GO:0019853)
0.3 1.0 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.3 1.0 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
0.3 14.0 GO:0048278 membrane docking(GO:0022406) vesicle docking(GO:0048278)
0.3 5.1 GO:0006833 water transport(GO:0006833) fluid transport(GO:0042044)
0.2 3.5 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.2 13.3 GO:0009736 cytokinin-activated signaling pathway(GO:0009736)
0.2 3.7 GO:0048768 root hair cell tip growth(GO:0048768)
0.2 14.4 GO:0006633 fatty acid biosynthetic process(GO:0006633)
0.2 11.6 GO:0071369 cellular response to ethylene stimulus(GO:0071369)
0.2 3.3 GO:0000272 polysaccharide catabolic process(GO:0000272)
0.2 2.5 GO:0048015 phosphatidylinositol-mediated signaling(GO:0048015)
0.2 8.4 GO:0006897 endocytosis(GO:0006897)
0.2 9.4 GO:0010073 meristem maintenance(GO:0010073)
0.2 4.1 GO:2000028 regulation of photoperiodism, flowering(GO:2000028)
0.2 0.3 GO:0048462 transmitting tissue development(GO:0010500) carpel formation(GO:0048462)
0.1 3.1 GO:0010075 regulation of meristem growth(GO:0010075)
0.1 9.0 GO:0006413 translational initiation(GO:0006413)
0.1 5.5 GO:0045489 pectin biosynthetic process(GO:0045489)
0.1 4.7 GO:0009696 salicylic acid metabolic process(GO:0009696)
0.1 3.7 GO:0080092 regulation of pollen tube growth(GO:0080092)
0.1 9.4 GO:0010256 endomembrane system organization(GO:0010256)
0.1 8.7 GO:0009860 pollen tube growth(GO:0009860)
0.1 0.7 GO:0008214 protein demethylation(GO:0006482) protein dealkylation(GO:0008214) histone demethylation(GO:0016577) histone lysine demethylation(GO:0070076)
0.1 0.8 GO:0031365 N-terminal protein amino acid modification(GO:0031365)
0.1 6.3 GO:0017148 negative regulation of translation(GO:0017148) negative regulation of cellular amide metabolic process(GO:0034249)
0.1 56.8 GO:0006508 proteolysis(GO:0006508)
0.1 7.6 GO:0000725 recombinational repair(GO:0000725)
0.1 1.1 GO:0070475 rRNA base methylation(GO:0070475)
0.1 7.9 GO:0007389 pattern specification process(GO:0007389)
0.1 12.5 GO:0032259 methylation(GO:0032259)
0.1 4.7 GO:0009741 response to brassinosteroid(GO:0009741)
0.1 0.9 GO:0046854 lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854)
0.1 0.9 GO:0010089 xylem development(GO:0010089)
0.1 0.4 GO:0010233 vascular transport(GO:0010232) phloem transport(GO:0010233)
0.0 0.3 GO:0045824 negative regulation of innate immune response(GO:0045824)
0.0 0.9 GO:0009640 photomorphogenesis(GO:0009640)
0.0 3.2 GO:0007005 mitochondrion organization(GO:0007005)
0.0 0.9 GO:0043254 regulation of protein complex assembly(GO:0043254)
0.0 0.8 GO:0006885 regulation of pH(GO:0006885)
0.0 4.0 GO:0006412 translation(GO:0006412)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
13.3 119.5 GO:0009503 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
12.7 38.2 GO:0043667 pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674)
10.7 10.7 GO:0016328 lateral plasma membrane(GO:0016328)
8.7 26.0 GO:0030093 chloroplast photosystem I(GO:0030093)
5.3 221.4 GO:0010319 stromule(GO:0010319)
5.2 57.1 GO:0009522 photosystem I(GO:0009522)
4.4 30.7 GO:0009533 chloroplast stromal thylakoid(GO:0009533)
4.0 177.8 GO:0009543 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
3.9 62.8 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
3.2 12.9 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
2.9 38.3 GO:0045298 tubulin complex(GO:0045298)
2.7 8.0 GO:0033281 TAT protein transport complex(GO:0033281)
2.6 23.8 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
2.5 37.1 GO:0019897 extrinsic component of plasma membrane(GO:0019897)
2.2 6.7 GO:1990298 bub1-bub3 complex(GO:1990298)
2.1 10.4 GO:0009897 external side of plasma membrane(GO:0009897)
1.6 7.8 GO:0009331 glycerol-3-phosphate dehydrogenase complex(GO:0009331)
1.3 32.1 GO:0005871 kinesin complex(GO:0005871)
1.1 7.9 GO:0030139 endocytic vesicle(GO:0030139)
1.0 211.8 GO:0009505 plant-type cell wall(GO:0009505)
1.0 43.3 GO:0042646 plastid nucleoid(GO:0042646)
1.0 148.3 GO:0099503 secretory vesicle(GO:0099503)
0.9 9.5 GO:0009986 cell surface(GO:0009986)
0.8 4.2 GO:0010369 chromocenter(GO:0010369)
0.8 14.7 GO:0070069 cytochrome complex(GO:0070069)
0.7 14.0 GO:0000792 heterochromatin(GO:0000792)
0.7 2.9 GO:0030863 cortical cytoskeleton(GO:0030863)
0.7 3.6 GO:0031907 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.7 38.3 GO:0009706 chloroplast inner membrane(GO:0009706)
0.6 7.9 GO:0031012 extracellular matrix(GO:0031012)
0.6 8.4 GO:0030125 clathrin vesicle coat(GO:0030125)
0.6 21.7 GO:0000152 nuclear ubiquitin ligase complex(GO:0000152)
0.5 7.3 GO:0005880 nuclear microtubule(GO:0005880)
0.5 23.4 GO:0010287 plastoglobule(GO:0010287)
0.4 10.3 GO:0031306 intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307)
0.4 42.9 GO:0005615 extracellular space(GO:0005615)
0.4 36.3 GO:0000138 Golgi trans cisterna(GO:0000138)
0.4 7.2 GO:0016459 myosin complex(GO:0016459)
0.4 105.9 GO:0009534 chloroplast thylakoid(GO:0009534)
0.4 3.2 GO:0009513 etioplast(GO:0009513)
0.4 96.2 GO:0031225 anchored component of membrane(GO:0031225)
0.4 9.1 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.4 23.0 GO:0005770 late endosome(GO:0005770)
0.3 22.1 GO:0016607 nuclear speck(GO:0016607)
0.3 78.1 GO:0005618 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.3 8.7 GO:0005811 lipid particle(GO:0005811)
0.3 56.7 GO:0048046 apoplast(GO:0048046)
0.3 9.3 GO:0009504 cell plate(GO:0009504)
0.3 6.3 GO:0000145 exocyst(GO:0000145)
0.2 9.7 GO:0010008 endosome membrane(GO:0010008)
0.2 7.7 GO:1902554 serine/threonine protein kinase complex(GO:1902554)
0.2 73.8 GO:0009570 chloroplast stroma(GO:0009570)
0.2 321.6 GO:0005576 extracellular region(GO:0005576)
0.1 10.7 GO:0005874 microtubule(GO:0005874)
0.1 14.5 GO:0005768 endosome(GO:0005768)
0.1 5.0 GO:0015629 actin cytoskeleton(GO:0015629)
0.1 0.5 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.1 1.3 GO:0000118 histone deacetylase complex(GO:0000118)
0.1 38.8 GO:0005783 endoplasmic reticulum(GO:0005783)
0.0 13.9 GO:0005730 nucleolus(GO:0005730)
0.0 2.4 GO:0033648 host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
23.0 69.0 GO:0051738 xanthophyll binding(GO:0051738)
13.9 55.6 GO:0050162 oxalate oxidase activity(GO:0050162)
13.4 40.2 GO:0009924 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
12.3 36.9 GO:0016643 glutamate synthase (ferredoxin) activity(GO:0016041) oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulfur protein as acceptor(GO:0016643)
9.2 36.7 GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158)
8.1 24.4 GO:0010297 heteropolysaccharide binding(GO:0010297)
7.7 23.2 GO:0016802 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
6.3 18.8 GO:0010283 pinoresinol reductase activity(GO:0010283)
6.2 80.0 GO:0042389 omega-3 fatty acid desaturase activity(GO:0042389)
5.8 17.4 GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661)
5.1 40.5 GO:0016987 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
5.0 160.1 GO:0004089 carbonate dehydratase activity(GO:0004089)
4.9 19.5 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
4.8 14.4 GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
4.8 57.2 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
4.7 14.1 GO:0010242 oxygen evolving activity(GO:0010242)
4.4 13.3 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
4.4 4.4 GO:0015930 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
4.4 13.1 GO:0016630 protochlorophyllide reductase activity(GO:0016630)
4.0 92.5 GO:0016168 chlorophyll binding(GO:0016168)
3.9 11.8 GO:0010291 carotene beta-ring hydroxylase activity(GO:0010291)
3.9 19.3 GO:0046715 borate transmembrane transporter activity(GO:0046715) borate efflux transmembrane transporter activity(GO:0080139)
3.6 119.2 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
3.6 90.1 GO:0004565 beta-galactosidase activity(GO:0004565)
3.6 10.7 GO:0045430 chalcone isomerase activity(GO:0045430)
3.4 37.7 GO:0016872 intramolecular lyase activity(GO:0016872)
3.3 20.0 GO:0042879 phosphoglycerate transmembrane transporter activity(GO:0015120) aldonate transmembrane transporter activity(GO:0042879)
2.9 17.7 GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156)
2.9 8.6 GO:0003838 sterol 24-C-methyltransferase activity(GO:0003838)
2.9 8.6 GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase(GO:0008839)
2.7 70.1 GO:0004805 trehalose-phosphatase activity(GO:0004805)
2.6 10.4 GO:0015245 fatty acid transporter activity(GO:0015245)
2.6 20.6 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
2.5 15.1 GO:0018708 thiol S-methyltransferase activity(GO:0018708)
2.5 19.8 GO:0042299 lupeol synthase activity(GO:0042299)
2.5 7.4 GO:0050736 O-malonyltransferase activity(GO:0050736)
2.5 9.8 GO:0008395 steroid hydroxylase activity(GO:0008395)
2.4 51.3 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
2.4 12.1 GO:0035620 ceramide transporter activity(GO:0035620) sphingolipid transporter activity(GO:0046624) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388)
2.4 7.1 GO:0001216 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
2.3 9.1 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
2.2 6.5 GO:1990404 protein ADP-ribosylase activity(GO:1990404)
2.1 21.2 GO:0016688 L-ascorbate peroxidase activity(GO:0016688)
2.1 20.9 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
2.1 47.7 GO:0102336 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
2.0 22.5 GO:0016721 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
2.0 6.0 GO:0071614 linoleic acid epoxygenase activity(GO:0071614)
2.0 7.8 GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity(GO:0004729) protoporphyrinogen oxidase activity(GO:0070818)
1.9 7.8 GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity(GO:0004367)
1.9 46.9 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
1.9 14.9 GO:0008083 growth factor activity(GO:0008083)
1.8 21.4 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
1.7 5.2 GO:0004421 hydroxymethylglutaryl-CoA synthase activity(GO:0004421)
1.7 12.0 GO:0004372 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
1.7 15.1 GO:0004096 catalase activity(GO:0004096)
1.6 16.0 GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor(GO:0016634)
1.6 9.5 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
1.6 17.2 GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
1.6 12.5 GO:0010011 auxin binding(GO:0010011)
1.5 4.6 GO:0005094 Rho GDP-dissociation inhibitor activity(GO:0005094)
1.5 9.1 GO:0017150 tRNA dihydrouridine synthase activity(GO:0017150)
1.5 10.6 GO:0048487 beta-tubulin binding(GO:0048487)
1.5 49.6 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
1.4 5.7 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
1.4 6.9 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
1.4 8.2 GO:0045547 dehydrodolichyl diphosphate synthase activity(GO:0045547)
1.4 9.5 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
1.4 19.0 GO:0008097 5S rRNA binding(GO:0008097)
1.4 36.5 GO:0008810 cellulase activity(GO:0008810)
1.3 16.2 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
1.3 6.5 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
1.3 6.3 GO:0010313 phytochrome binding(GO:0010313)
1.2 4.9 GO:0016882 cyclo-ligase activity(GO:0016882)
1.2 4.7 GO:0004647 phosphoserine phosphatase activity(GO:0004647)
1.2 12.9 GO:0102360 daphnetin 3-O-glucosyltransferase activity(GO:0102360)
1.1 4.6 GO:0004113 cyclic-nucleotide phosphodiesterase activity(GO:0004112) 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity(GO:0004113)
1.1 67.9 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
1.1 6.8 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
1.1 5.3 GO:1990841 promoter-specific chromatin binding(GO:1990841)
1.1 54.9 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
1.0 12.2 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
1.0 6.0 GO:0004310 farnesyl-diphosphate farnesyltransferase activity(GO:0004310) squalene synthase activity(GO:0051996)
1.0 19.5 GO:0005199 structural constituent of cell wall(GO:0005199)
0.9 68.1 GO:0003777 microtubule motor activity(GO:0003777)
0.9 3.7 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.9 6.4 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.9 38.3 GO:0008171 O-methyltransferase activity(GO:0008171)
0.9 115.4 GO:0009055 electron carrier activity(GO:0009055)
0.9 11.1 GO:2001070 starch binding(GO:2001070)
0.8 3.2 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.8 2.4 GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314)
0.8 15.5 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.7 4.5 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.7 6.6 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.7 7.3 GO:0008379 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.7 15.8 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.7 3.5 GO:0005366 myo-inositol:proton symporter activity(GO:0005366)
0.7 4.2 GO:0004766 spermidine synthase activity(GO:0004766)
0.7 47.0 GO:0004650 polygalacturonase activity(GO:0004650)
0.7 3.5 GO:0033201 starch synthase activity(GO:0009011) alpha-1,4-glucan synthase activity(GO:0033201)
0.7 6.0 GO:0004550 nucleoside diphosphate kinase activity(GO:0004550)
0.6 10.4 GO:0016157 sucrose synthase activity(GO:0016157)
0.6 3.0 GO:0005354 galactose transmembrane transporter activity(GO:0005354)
0.6 6.2 GO:0008970 phosphatidylcholine 1-acylhydrolase activity(GO:0008970)
0.5 27.3 GO:0004185 serine-type carboxypeptidase activity(GO:0004185)
0.5 5.4 GO:0070300 phosphatidic acid binding(GO:0070300)
0.5 3.9 GO:0005536 glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.5 14.8 GO:0044183 protein binding involved in protein folding(GO:0044183)
0.5 13.2 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.5 2.3 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.4 23.6 GO:0022884 protein transmembrane transporter activity(GO:0008320) macromolecule transmembrane transporter activity(GO:0022884)
0.4 5.3 GO:0046556 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.4 17.5 GO:0030145 manganese ion binding(GO:0030145)
0.4 6.5 GO:0080161 auxin transmembrane transporter activity(GO:0080161)
0.4 27.8 GO:0003743 translation initiation factor activity(GO:0003743)
0.4 3.3 GO:0003955 NAD(P)H dehydrogenase (quinone) activity(GO:0003955)
0.4 8.4 GO:0030276 clathrin binding(GO:0030276)
0.4 1.1 GO:0008169 C-methyltransferase activity(GO:0008169)
0.3 2.4 GO:0046975 histone methyltransferase activity (H3-K36 specific)(GO:0046975)
0.3 26.1 GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds(GO:0016799)
0.3 4.6 GO:0019903 protein phosphatase binding(GO:0019903)
0.3 15.0 GO:0003993 acid phosphatase activity(GO:0003993)
0.3 0.9 GO:0019904 protein domain specific binding(GO:0019904)
0.3 19.2 GO:0008017 microtubule binding(GO:0008017)
0.3 3.1 GO:0016273 arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274)
0.3 9.1 GO:0033558 histone deacetylase activity(GO:0004407) protein deacetylase activity(GO:0033558)
0.2 2.5 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.2 3.1 GO:0045735 nutrient reservoir activity(GO:0045735)
0.2 6.5 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.2 8.8 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.2 10.0 GO:0003713 transcription coactivator activity(GO:0003713)
0.2 4.7 GO:0080031 methyl salicylate esterase activity(GO:0080031) methyl jasmonate esterase activity(GO:0080032)
0.2 1.0 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.2 22.1 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.2 2.7 GO:0001085 RNA polymerase II transcription factor binding(GO:0001085)
0.2 6.1 GO:0008378 galactosyltransferase activity(GO:0008378)
0.2 3.9 GO:0008308 voltage-gated anion channel activity(GO:0008308)
0.2 0.9 GO:0003785 actin monomer binding(GO:0003785)
0.2 14.0 GO:0030599 pectinesterase activity(GO:0030599)
0.2 3.6 GO:0005227 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.2 12.7 GO:0019901 protein kinase binding(GO:0019901)
0.2 23.3 GO:0003924 GTPase activity(GO:0003924)
0.2 1.1 GO:0002020 protease binding(GO:0002020)
0.1 3.5 GO:0004568 chitinase activity(GO:0004568)
0.1 7.1 GO:0004712 protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.1 4.1 GO:0015385 sodium:proton antiporter activity(GO:0015385)
0.1 14.0 GO:0003682 chromatin binding(GO:0003682)
0.1 4.7 GO:0005484 SNAP receptor activity(GO:0005484)
0.1 2.9 GO:0019001 GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561)
0.1 10.9 GO:0042803 protein homodimerization activity(GO:0042803)
0.1 0.3 GO:0003680 AT DNA binding(GO:0003680)
0.1 2.6 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.0 0.4 GO:1904680 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.0 0.4 GO:0016844 strictosidine synthase activity(GO:0016844)
0.0 0.9 GO:0008080 N-acetyltransferase activity(GO:0008080)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
21.2 169.6 PID CMYB PATHWAY C-MYB transcription factor network
10.1 40.2 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway
4.2 25.2 PID HES HEY PATHWAY Notch-mediated HES/HEY network
2.4 7.3 PID AURORA A PATHWAY Aurora A signaling
1.7 5.1 PID ARF6 DOWNSTREAM PATHWAY Arf6 downstream pathway
1.2 9.6 NABA CORE MATRISOME Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans
1.2 8.3 PID TELOMERASE PATHWAY Regulation of Telomerase

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
28.3 169.6 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
4.4 13.2 REACTOME INTEGRATION OF ENERGY METABOLISM Genes involved in Integration of energy metabolism
3.0 11.9 REACTOME VEGF LIGAND RECEPTOR INTERACTIONS Genes involved in VEGF ligand-receptor interactions
2.5 40.2 REACTOME DEVELOPMENTAL BIOLOGY Genes involved in Developmental Biology
1.4 6.8 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.3 1.9 REACTOME SIGNALING BY ERBB4 Genes involved in Signaling by ERBB4
0.1 0.2 REACTOME COPI MEDIATED TRANSPORT Genes involved in COPI Mediated Transport