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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G43000
Z-value: 1.84
Transcription factors associated with AT2G43000
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G43000
|
AT2G43000 | NAC domain containing protein 42 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC042 | arTal_v1_Chr2_-_17882636_17882636 | 0.46 | 1.5e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_21189859_21189967 Show fit | 6.58 |
AT3G57260.1
AT3G57260.2 |
beta-1,3-glucanase 2 |
|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 5.08 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr1_+_28177670_28177670 Show fit | 4.64 |
AT1G75040.1
|
pathogenesis-related protein 5 |
|
| arTal_v1_Chr5_-_3402389_3402389 Show fit | 4.38 |
AT5G10760.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr1_+_21207537_21207537 Show fit | 4.34 |
AT1G56600.1
|
galactinol synthase 2 |
|
| arTal_v1_Chr4_-_9201643_9201643 Show fit | 4.06 |
AT4G16260.2
AT4G16260.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr4_+_6491017_6491017 Show fit | 3.93 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr1_-_19336072_19336135 Show fit | 3.60 |
AT1G52000.2
AT1G52000.1 |
Mannose-binding lectin superfamily protein |
|
| arTal_v1_Chr2_-_13862614_13862614 Show fit | 3.48 |
AT2G32680.1
|
receptor like protein 23 |
|
| arTal_v1_Chr1_+_19515143_19515151 Show fit | 3.47 |
AT1G52400.3
AT1G52400.2 |
beta glucosidase 18 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G43000
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 11.6 | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) |
| 0.3 | 11.4 | GO:0007166 | cell surface receptor signaling pathway(GO:0007166) |
| 0.3 | 11.0 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.2 | 9.5 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.2 | 9.0 | GO:0019758 | S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761) |
| 0.1 | 8.8 | GO:0009615 | response to virus(GO:0009615) |
| 0.9 | 8.5 | GO:0010188 | response to microbial phytotoxin(GO:0010188) |
| 0.4 | 8.4 | GO:0002238 | response to molecule of fungal origin(GO:0002238) |
| 0.0 | 8.2 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.6 | 7.9 | GO:0052317 | camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 43.7 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.0 | 30.7 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.0 | 13.8 | GO:0005773 | vacuole(GO:0005773) |
| 0.9 | 8.9 | GO:0010168 | ER body(GO:0010168) |
| 0.0 | 6.7 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 5.4 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 5.4 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 5.1 | GO:0005615 | extracellular space(GO:0005615) |
| 0.1 | 4.9 | GO:0016604 | nuclear body(GO:0016604) |
| 0.0 | 4.4 | GO:0000790 | nuclear chromatin(GO:0000790) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 19.6 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 14.0 | GO:0001067 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 8.9 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.9 | 8.4 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.2 | 7.8 | GO:0019199 | transmembrane receptor protein kinase activity(GO:0019199) |
| 0.1 | 7.5 | GO:0030247 | pattern binding(GO:0001871) polysaccharide binding(GO:0030247) |
| 1.2 | 7.3 | GO:0070547 | L-tyrosine:2-oxoglutarate aminotransferase activity(GO:0004838) L-tyrosine aminotransferase activity(GO:0070547) |
| 0.1 | 7.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 6.7 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
| 0.0 | 6.3 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 1.9 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.1 | 0.6 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.2 | 0.5 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.4 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.3 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.3 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.1 | 0.2 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.1 | 0.2 | PID SHP2 PATHWAY | SHP2 signaling |
| 0.0 | 0.1 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.0 | 0.0 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.0 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.5 | 1.5 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.2 | 1.0 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.2 | 0.9 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.2 | 0.6 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.1 | 0.6 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.1 | 0.4 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |
| 0.1 | 0.4 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 0.3 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.0 | 0.3 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |