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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G42430
Z-value: 0.42
Transcription factors associated with AT2G42430
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G42430
|
AT2G42430 | lateral organ boundaries-domain 16 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| LBD16 | arTal_v1_Chr2_+_17663353_17663353 | -0.02 | 9.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 0.64 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr2_-_16690182_16690182 Show fit | 0.60 |
AT2G39980.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 0.58 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr3_-_21183144_21183144 Show fit | 0.56 |
AT3G57240.1
|
beta-1,3-glucanase 3 |
|
| arTal_v1_Chr1_+_11310997_11310997 Show fit | 0.54 |
AT1G31580.1
|
ECS1 |
|
| arTal_v1_Chr3_+_22680960_22680960 Show fit | 0.52 |
AT3G61280.1
AT3G61280.2 |
O-glucosyltransferase rumi-like protein (DUF821) |
|
| arTal_v1_Chr4_+_2445775_2445794 Show fit | 0.43 |
AT4G04830.1
AT4G04830.2 |
methionine sulfoxide reductase B5 |
|
| arTal_v1_Chr2_-_10737800_10737800 Show fit | 0.42 |
AT2G25200.1
|
hypothetical protein (DUF868) |
|
| arTal_v1_Chr3_+_5592644_5592644 Show fit | 0.41 |
AT3G16460.2
|
Mannose-binding lectin superfamily protein |
|
| arTal_v1_Chr5_-_7385833_7385833 Show fit | 0.40 |
AT5G22310.1
|
trichohyalin-like protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G42430
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.2 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 0.6 | GO:0010929 | positive regulation of auxin mediated signaling pathway(GO:0010929) |
| 0.1 | 0.6 | GO:1902584 | positive regulation of response to water deprivation(GO:1902584) |
| 0.0 | 0.6 | GO:0030091 | protein repair(GO:0030091) |
| 0.1 | 0.5 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.0 | 0.5 | GO:0006074 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
| 0.0 | 0.3 | GO:0080183 | response to photooxidative stress(GO:0080183) |
| 0.0 | 0.3 | GO:0009864 | induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864) |
| 0.1 | 0.2 | GO:0060776 | simple leaf morphogenesis(GO:0060776) |
| 0.1 | 0.2 | GO:0033194 | response to hydroperoxide(GO:0033194) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.0 | 0.4 | GO:0031307 | intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307) |
| 0.0 | 0.3 | GO:0033179 | proton-transporting V-type ATPase, V0 domain(GO:0033179) |
| 0.0 | 0.3 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.0 | 0.2 | GO:0070062 | extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561) |
| 0.0 | 0.1 | GO:0005775 | vacuolar lumen(GO:0005775) |
| 0.0 | 0.1 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.0 | 0.0 | GO:0042788 | polysomal ribosome(GO:0042788) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.2 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.1 | 0.6 | GO:0010296 | prenylcysteine methylesterase activity(GO:0010296) |
| 0.0 | 0.6 | GO:0042973 | glucan endo-1,3-beta-D-glucosidase activity(GO:0042973) |
| 0.1 | 0.5 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 0.0 | 0.5 | GO:0003843 | 1,3-beta-D-glucan synthase activity(GO:0003843) |
| 0.1 | 0.4 | GO:0001653 | peptide receptor activity(GO:0001653) |
| 0.0 | 0.4 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.0 | 0.4 | GO:0070567 | cytidylyltransferase activity(GO:0070567) |
| 0.0 | 0.3 | GO:0047938 | glucose-6-phosphate 1-epimerase activity(GO:0047938) |
| 0.1 | 0.2 | GO:0036381 | pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity(GO:0036381) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.0 | 0.1 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.0 | 0.1 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.0 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |