Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT2G40740
Z-value: 2.77
Transcription factors associated with AT2G40740
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G40740
|
AT2G40740 | WRKY DNA-binding protein 55 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY55 | arTal_v1_Chr2_+_16997078_16997177 | -0.30 | 1.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_8294446_8294452 Show fit | 6.45 |
AT4G14400.2
AT4G14400.3 |
ankyrin repeat family protein |
|
| arTal_v1_Chr5_+_24608605_24608605 Show fit | 6.24 |
AT5G61160.1
|
anthocyanin 5-aromatic acyltransferase 1 |
|
| arTal_v1_Chr4_+_8294165_8294165 Show fit | 5.95 |
AT4G14400.1
|
ankyrin repeat family protein |
|
| arTal_v1_Chr2_-_6493512_6493512 Show fit | 4.94 |
AT2G15020.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_5133860_5133860 Show fit | 4.84 |
AT1G14880.1
|
PLANT CADMIUM RESISTANCE 1 |
|
| arTal_v1_Chr3_-_19139423_19139423 Show fit | 4.82 |
AT3G51600.1
|
lipid transfer protein 5 |
|
| arTal_v1_Chr1_+_1882907_1882907 Show fit | 4.76 |
AT1G06160.1
|
octadecanoid-responsive AP2/ERF 59 |
|
| arTal_v1_Chr1_+_28177670_28177670 Show fit | 4.71 |
AT1G75040.1
|
pathogenesis-related protein 5 |
|
| arTal_v1_Chr2_+_16476198_16476216 Show fit | 4.48 |
AT2G39470.1
AT2G39470.2 AT2G39470.3 |
PsbP-like protein 2 |
|
| arTal_v1_Chr1_+_10477885_10477885 Show fit | 4.37 |
AT1G29930.1
|
chlorophyll A/B binding protein 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G40740
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 25.1 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.0 | 22.3 | GO:0006468 | protein phosphorylation(GO:0006468) |
| 1.2 | 16.0 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.5 | 14.2 | GO:0009645 | response to low light intensity stimulus(GO:0009645) |
| 0.8 | 13.9 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 1.4 | 13.5 | GO:1902290 | positive regulation of defense response to oomycetes(GO:1902290) |
| 0.6 | 12.1 | GO:2000033 | regulation of seed dormancy process(GO:2000033) |
| 0.3 | 12.0 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.4 | 10.5 | GO:0006284 | base-excision repair(GO:0006284) |
| 1.1 | 10.0 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 159.2 | GO:0009536 | plastid(GO:0009536) |
| 0.2 | 70.2 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 42.2 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 35.3 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.1 | 35.0 | GO:0048046 | apoplast(GO:0048046) |
| 0.6 | 27.0 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 20.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.3 | 20.2 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
| 0.6 | 18.9 | GO:0009523 | photosystem II(GO:0009523) |
| 0.1 | 18.6 | GO:0044434 | chloroplast part(GO:0044434) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 29.8 | GO:0016301 | kinase activity(GO:0016301) |
| 0.1 | 24.8 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 16.5 | GO:0043531 | ADP binding(GO:0043531) |
| 0.5 | 16.0 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.4 | 14.1 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.6 | 13.0 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.5 | 12.7 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 12.1 | GO:0004497 | monooxygenase activity(GO:0004497) |
| 0.0 | 12.1 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.8 | 11.6 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 11.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.8 | 4.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.3 | 2.6 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 2.2 | PID E2F PATHWAY | E2F transcription factor network |
| 0.6 | 1.7 | PID INTEGRIN1 PATHWAY | Beta1 integrin cell surface interactions |
| 0.3 | 1.2 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.4 | 1.1 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.1 | 1.1 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.2 | 0.8 | PID REELIN PATHWAY | Reelin signaling pathway |
| 0.2 | 0.7 | PID ATM PATHWAY | ATM pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.1 | 12.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 2.2 | 6.5 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 1.1 | 3.4 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.1 | 2.6 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.2 | 2.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 1.7 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.3 | 1.6 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.3 | 1.4 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 0.4 | 1.3 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 1.2 | REACTOME LATE PHASE OF HIV LIFE CYCLE | Genes involved in Late Phase of HIV Life Cycle |