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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G40260
Z-value: 0.77
Transcription factors associated with AT2G40260
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G40260
|
AT2G40260 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT2G40260 | arTal_v1_Chr2_-_16818730_16818730 | 0.03 | 8.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 2.76 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr2_+_13581534_13581534 Show fit | 2.52 |
AT2G31945.1
|
transmembrane protein |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 2.45 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr1_-_30053936_30053936 Show fit | 2.41 |
AT1G79900.1
|
Mitochondrial substrate carrier family protein |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 2.39 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr3_+_7581959_7581959 Show fit | 2.37 |
AT3G21520.1
|
transmembrane protein, putative (DUF679 domain membrane protein 1) |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 2.30 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr1_+_1469541_1469541 Show fit | 2.14 |
AT1G05100.1
|
mitogen-activated protein kinase kinase kinase 18 |
|
| arTal_v1_Chr2_+_1175581_1175581 Show fit | 2.04 |
AT2G03850.1
|
Late embryogenesis abundant protein (LEA) family protein |
|
| arTal_v1_Chr1_+_9825169_9825169 Show fit | 2.04 |
AT1G28130.1
|
Auxin-responsive GH3 family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G40260
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.2 | GO:0009749 | response to glucose(GO:0009749) |
| 0.3 | 5.5 | GO:0019374 | galactolipid metabolic process(GO:0019374) |
| 0.1 | 5.0 | GO:0072665 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 1.3 | 4.0 | GO:0031115 | negative regulation of microtubule polymerization(GO:0031115) |
| 0.1 | 3.4 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 1.1 | 3.3 | GO:0072708 | response to sorbitol(GO:0072708) |
| 0.2 | 3.0 | GO:0071545 | inositol phosphate dephosphorylation(GO:0046855) inositol phosphate catabolic process(GO:0071545) |
| 0.7 | 2.9 | GO:0030643 | cellular phosphate ion homeostasis(GO:0030643) cellular trivalent inorganic anion homeostasis(GO:0072502) |
| 0.7 | 2.8 | GO:0015697 | quaternary ammonium group transport(GO:0015697) |
| 0.3 | 2.8 | GO:0090158 | endoplasmic reticulum membrane organization(GO:0090158) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.7 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 3.4 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 3.2 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 2.6 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.0 | 2.4 | GO:0000785 | chromatin(GO:0000785) |
| 0.0 | 2.4 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.0 | 2.4 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.1 | 2.3 | GO:0005778 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
| 0.0 | 2.3 | GO:0000139 | Golgi membrane(GO:0000139) |
| 0.0 | 2.1 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 5.5 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.3 | 5.0 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.0 | 4.9 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 4.5 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 3.9 | GO:0004725 | protein tyrosine phosphatase activity(GO:0004725) |
| 0.1 | 3.5 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.1 | 3.4 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.1 | 3.2 | GO:0005096 | GTPase activator activity(GO:0005096) |
| 0.3 | 3.1 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 0.0 | 3.1 | GO:0043130 | ubiquitin binding(GO:0043130) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 1.0 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 0.6 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.1 | 0.4 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.1 | 0.3 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.2 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.1 | 0.1 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.0 | 0.1 | PID IGF1 PATHWAY | IGF1 pathway |
| 0.0 | 0.1 | PID CDC42 PATHWAY | CDC42 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.2 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.1 | 1.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 0.9 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
| 0.1 | 0.7 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.2 | 0.6 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 0.6 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.1 | 0.5 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |
| 0.1 | 0.5 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.0 | 0.4 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.0 | 0.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |