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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G38340
Z-value: 1.06
Transcription factors associated with AT2G38340
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G38340
|
AT2G38340 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DREB19 | arTal_v1_Chr2_-_16068615_16068615 | 0.85 | 1.1e-08 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 5.01 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 4.33 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 4.05 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 4.02 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 3.82 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr4_+_17855637_17855637 Show fit | 3.67 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
|
| arTal_v1_Chr3_+_9208861_9208941 Show fit | 3.56 |
AT3G25290.1
AT3G25290.2 |
Auxin-responsive family protein |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 3.32 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr4_+_1464467_1464467 Show fit | 3.30 |
AT4G03320.1
|
translocon at the inner envelope membrane of chloroplasts 20-IV |
|
| arTal_v1_Chr5_-_6042938_6043014 Show fit | 3.15 |
AT5G18270.2
AT5G18270.1 |
NAC domain containing protein 87 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G38340
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.5 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 8.8 | GO:0010200 | response to chitin(GO:0010200) |
| 0.2 | 8.3 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 1.2 | 7.2 | GO:0009413 | response to flooding(GO:0009413) |
| 0.1 | 6.5 | GO:0009631 | cold acclimation(GO:0009631) |
| 1.5 | 6.2 | GO:0016139 | glycoside catabolic process(GO:0016139) |
| 0.1 | 6.0 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
| 0.6 | 5.8 | GO:0051410 | detoxification of nitrogen compound(GO:0051410) |
| 0.5 | 5.6 | GO:0000304 | response to singlet oxygen(GO:0000304) |
| 0.0 | 5.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.1 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 5.9 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 4.4 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.1 | 3.9 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.0 | 3.9 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.5 | 3.8 | GO:0005784 | Sec61 translocon complex(GO:0005784) |
| 0.0 | 3.2 | GO:0042025 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.1 | 2.5 | GO:0008287 | protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293) |
| 0.0 | 2.5 | GO:0071013 | catalytic step 2 spliceosome(GO:0071013) |
| 0.0 | 2.4 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 16.7 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 9.4 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.0 | 9.1 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
| 0.1 | 8.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 7.1 | GO:0019900 | kinase binding(GO:0019900) |
| 0.1 | 6.6 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.5 | 6.5 | GO:0052747 | sinapyl alcohol dehydrogenase activity(GO:0052747) |
| 1.5 | 6.2 | GO:0046593 | mandelonitrile lyase activity(GO:0046593) |
| 1.0 | 5.8 | GO:0080109 | indole-3-acetonitrile nitrile hydratase activity(GO:0080109) |
| 0.5 | 5.8 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.3 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.2 | 1.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.2 | 0.6 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
| 0.1 | 0.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.5 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.5 | PID ATR PATHWAY | ATR signaling pathway |
| 0.4 | 0.4 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
| 0.1 | 0.4 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.0 | 0.1 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.0 | 0.1 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.4 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.2 | 1.4 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.3 | 1.3 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.2 | 1.2 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.1 | 0.9 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.1 | 0.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.6 | REACTOME DOWNSTREAM SIGNALING OF ACTIVATED FGFR | Genes involved in Downstream signaling of activated FGFR |
| 0.1 | 0.6 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.1 | 0.5 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.1 | 0.5 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |