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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G37590
Z-value: 0.69
Transcription factors associated with AT2G37590
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G37590
|
AT2G37590 | DNA binding with one finger 2.4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DOF2.4 | arTal_v1_Chr2_+_15769086_15769086 | -0.31 | 1.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 3.31 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 3.20 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 3.08 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 2.98 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 2.62 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 2.61 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr1_-_24606722_24606722 Show fit | 2.61 |
AT1G66100.1
|
Plant thionin |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 2.60 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 2.58 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 2.57 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G37590
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 16.9 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.8 | 15.0 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 12.7 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.9 | 11.6 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 10.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 7.4 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.1 | 7.0 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.1 | 7.0 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 0.3 | 6.9 | GO:0045168 | cell-cell signaling involved in cell fate commitment(GO:0045168) |
| 0.3 | 6.6 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 84.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 59.4 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 38.0 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.2 | 26.7 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.4 | 17.7 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 16.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 11.4 | GO:0048046 | apoplast(GO:0048046) |
| 0.2 | 10.2 | GO:0009579 | thylakoid(GO:0009579) |
| 0.8 | 6.5 | GO:0009533 | chloroplast stromal thylakoid(GO:0009533) |
| 0.2 | 6.2 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 16.6 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.5 | 16.2 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.1 | 11.6 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.2 | 11.3 | GO:0033612 | receptor serine/threonine kinase binding(GO:0033612) |
| 0.1 | 10.9 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.4 | 8.3 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.3 | 7.6 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.3 | 7.0 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.2 | 6.4 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.2 | 5.9 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 9.9 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.4 | 2.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 1.3 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.3 | 1.0 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.2 | 0.9 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.1 | 0.9 | PID ATR PATHWAY | ATR signaling pathway |
| 0.2 | 0.7 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.2 | 0.7 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.1 | 0.7 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.7 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.4 | 14.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 2.3 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.3 | 2.0 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.6 | 1.9 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.4 | 1.8 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.3 | 1.1 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 1.1 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 0.9 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.1 | 0.8 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.2 | 0.7 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |