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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G36270
Z-value: 1.63
Transcription factors associated with AT2G36270
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G36270
|
AT2G36270 | Basic-leucine zipper (bZIP) transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ABI5 | arTal_v1_Chr2_-_15207582_15207636 | -0.85 | 7.0e-09 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 11.43 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 10.89 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 10.11 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 10.08 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 9.41 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 8.93 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr1_+_6612630_6612630 Show fit | 8.63 |
AT1G19150.1
|
PSI type II chlorophyll a/b-binding protein (Lhca2*1) |
|
| arTal_v1_Chr2_+_14577083_14577083 Show fit | 8.52 |
AT2G34620.1
|
Mitochondrial transcription termination factor family protein |
|
| arTal_v1_Chr5_+_26298728_26298728 Show fit | 8.45 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
|
| arTal_v1_Chr5_+_4757856_4757972 Show fit | 8.35 |
AT5G14740.3
AT5G14740.6 AT5G14740.1 AT5G14740.7 AT5G14740.8 AT5G14740.2 AT5G14740.4 AT5G14740.5 |
carbonic anhydrase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G36270
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.6 | 65.6 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.6 | 59.0 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.7 | 45.7 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.5 | 45.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.5 | 31.3 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 4.9 | 29.7 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 1.5 | 28.8 | GO:0006949 | syncytium formation(GO:0006949) |
| 1.7 | 28.4 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 1.2 | 22.7 | GO:0010207 | photosystem II assembly(GO:0010207) |
| 0.9 | 21.3 | GO:0009767 | photosynthetic electron transport chain(GO:0009767) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 152.9 | GO:0005576 | extracellular region(GO:0005576) |
| 0.6 | 134.2 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.2 | 81.6 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 1.3 | 61.6 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 1.1 | 58.4 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.4 | 49.6 | GO:0009579 | thylakoid(GO:0009579) |
| 1.9 | 47.3 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 3.1 | 43.8 | GO:0009522 | photosystem I(GO:0009522) |
| 0.2 | 37.5 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 28.0 | GO:0048046 | apoplast(GO:0048046) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.2 | 83.0 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 5.7 | 34.4 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.9 | 28.1 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.4 | 28.1 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.4 | 27.8 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.9 | 23.3 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.9 | 21.6 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.8 | 21.0 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 3.1 | 18.3 | GO:0045156 | electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156) |
| 2.7 | 16.2 | GO:0016851 | magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 3.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.4 | 2.9 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.4 | 2.6 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.6 | 2.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.3 | 2.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 0.9 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.1 | 0.7 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.6 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.1 | 0.4 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.3 | 0.3 | PID ARF 3PATHWAY | Arf1 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.6 | 15.8 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 3.6 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.4 | 3.2 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 1.0 | 2.9 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.5 | 2.7 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.3 | 2.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 2.0 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 2.0 | REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX | Genes involved in Activation of the pre-replicative complex |
| 0.1 | 2.0 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.3 | 1.7 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |