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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G36010
Z-value: 2.37
Transcription factors associated with AT2G36010
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G36010
|
AT2G36010 | E2F transcription factor 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| E2F3 | arTal_v1_Chr2_+_15119516_15119589 | 0.08 | 6.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 14.33 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 11.35 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_-_6222300_6222300 Show fit | 11.18 |
AT5G18660.1
|
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 11.14 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 10.87 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 10.61 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr5_-_14562863_14562863 Show fit | 9.59 |
AT5G36910.1
|
thionin 2.2 |
|
| arTal_v1_Chr2_-_12433796_12433796 Show fit | 9.51 |
AT2G28950.1
|
expansin A6 |
|
| arTal_v1_Chr2_-_15790139_15790139 Show fit | 8.84 |
AT2G37640.1
|
Barwin-like endoglucanases superfamily protein |
|
| arTal_v1_Chr2_-_15789605_15789605 Show fit | 8.83 |
AT2G37640.2
|
Barwin-like endoglucanases superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G36010
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 27.2 | GO:0006949 | syncytium formation(GO:0006949) |
| 1.2 | 21.7 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 4.1 | 16.4 | GO:1902975 | cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975) |
| 0.3 | 16.4 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 2.7 | 16.1 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
| 0.1 | 15.9 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 2.6 | 15.6 | GO:0031507 | heterochromatin assembly(GO:0031507) |
| 1.0 | 9.6 | GO:0009405 | pathogenesis(GO:0009405) |
| 0.5 | 8.8 | GO:0006075 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
| 2.2 | 8.7 | GO:0080170 | hydrogen peroxide transmembrane transport(GO:0080170) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 58.9 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 51.6 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 40.4 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 16.9 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 1.6 | 16.0 | GO:0042555 | MCM complex(GO:0042555) |
| 0.3 | 12.6 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 1.0 | 9.2 | GO:0010369 | chromocenter(GO:0010369) |
| 0.5 | 8.8 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.4 | 8.6 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.0 | 7.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 21.7 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.3 | 21.2 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.8 | 11.7 | GO:0003688 | DNA replication origin binding(GO:0003688) |
| 3.3 | 10.0 | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
| 1.2 | 9.7 | GO:0070035 | ATP-dependent DNA helicase activity(GO:0004003) ATP-dependent helicase activity(GO:0008026) single-stranded DNA-dependent ATP-dependent DNA helicase activity(GO:0017116) single-stranded DNA-dependent ATPase activity(GO:0043142) purine NTP-dependent helicase activity(GO:0070035) |
| 1.0 | 9.2 | GO:0010429 | methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429) |
| 0.4 | 8.9 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.5 | 8.8 | GO:0003843 | 1,3-beta-D-glucan synthase activity(GO:0003843) |
| 0.1 | 8.6 | GO:0008017 | microtubule binding(GO:0008017) |
| 2.7 | 8.0 | GO:0000170 | sphingosine hydroxylase activity(GO:0000170) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 4.8 | PID ATR PATHWAY | ATR signaling pathway |
| 1.4 | 4.1 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.4 | 3.6 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 2.7 | PID E2F PATHWAY | E2F transcription factor network |
| 0.2 | 1.2 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.3 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.3 | 16.0 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 1.0 | 4.1 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.5 | 2.7 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.2 | 1.0 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.2 | 1.0 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.1 | 0.7 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.1 | 0.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |