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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G35530
Z-value: 0.56
Transcription factors associated with AT2G35530
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G35530
|
AT2G35530 | basic region/leucine zipper transcription factor 16 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| bZIP16 | arTal_v1_Chr2_-_14926609_14926609 | -0.47 | 1.1e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 2.17 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 2.05 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 1.90 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 1.90 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr2_+_14577083_14577083 Show fit | 1.72 |
AT2G34620.1
|
Mitochondrial transcription termination factor family protein |
|
| arTal_v1_Chr1_+_6612630_6612630 Show fit | 1.65 |
AT1G19150.1
|
PSI type II chlorophyll a/b-binding protein (Lhca2*1) |
|
| arTal_v1_Chr5_+_26298728_26298728 Show fit | 1.65 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
|
| arTal_v1_Chr2_+_2763449_2763513 Show fit | 1.58 |
AT2G06850.1
AT2G06850.2 |
xyloglucan endotransglucosylase/hydrolase 4 |
|
| arTal_v1_Chr1_-_25049424_25049424 Show fit | 1.46 |
AT1G67090.2
|
ribulose bisphosphate carboxylase small chain 1A |
|
| arTal_v1_Chr1_-_25049667_25049667 Show fit | 1.46 |
AT1G67090.1
|
ribulose bisphosphate carboxylase small chain 1A |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G35530
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 10.3 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.1 | 9.8 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.3 | 5.5 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.2 | 5.4 | GO:0010207 | photosystem II assembly(GO:0010207) |
| 0.1 | 4.0 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 2.6 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 2.3 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 2.3 | GO:0009645 | response to low light intensity stimulus(GO:0009645) |
| 0.2 | 2.2 | GO:0032876 | negative regulation of DNA endoreduplication(GO:0032876) |
| 0.1 | 2.2 | GO:0009827 | plant-type cell wall modification(GO:0009827) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 15.9 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 7.8 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.2 | 7.7 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.2 | 5.5 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.1 | 5.5 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 5.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.4 | 3.4 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.2 | 3.1 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.2 | 2.6 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.4 | 2.4 | GO:0009522 | photosystem I(GO:0009522) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 8.4 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 1.1 | 6.7 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.2 | 6.2 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.3 | 2.4 | GO:0004373 | glycogen (starch) synthase activity(GO:0004373) |
| 0.0 | 2.4 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.2 | 2.3 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.1 | 2.1 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.0 | 2.0 | GO:0019203 | carbohydrate phosphatase activity(GO:0019203) |
| 0.2 | 1.9 | GO:0009922 | fatty acid elongase activity(GO:0009922) |
| 0.0 | 1.9 | GO:0004650 | polygalacturonase activity(GO:0004650) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.1 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.0 | 0.1 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.8 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 0.1 | 0.4 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.4 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.0 | 0.1 | REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE | Genes involved in Synthesis of PIPs at the Golgi membrane |