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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G32460
Z-value: 0.78
Transcription factors associated with AT2G32460
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G32460
|
AT2G32460 | myb domain protein 101 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB101 | arTal_v1_Chr2_-_13784471_13784483 | -0.45 | 1.6e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 6.54 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 5.19 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 4.56 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr5_+_17760865_17760865 Show fit | 4.05 |
AT5G44130.1
|
FASCICLIN-like arabinogalactan protein 13 precursor |
|
| arTal_v1_Chr3_-_16448844_16448844 Show fit | 3.28 |
AT3G44990.1
|
xyloglucan endo-transglycosylase-related 8 |
|
| arTal_v1_Chr1_+_12851983_12851983 Show fit | 3.04 |
AT1G35140.1
|
Phosphate-responsive 1 family protein |
|
| arTal_v1_Chr5_-_8707885_8707885 Show fit | 2.72 |
AT5G25190.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr1_-_26515188_26515255 Show fit | 2.59 |
AT1G70370.2
AT1G70370.1 |
polygalacturonase 2 |
|
| arTal_v1_Chr4_-_10278794_10278794 Show fit | 2.43 |
AT4G18670.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr2_-_12785037_12785037 Show fit | 2.43 |
AT2G29980.2
|
fatty acid desaturase 3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G32460
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.0 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.2 | 6.5 | GO:0002213 | defense response to insect(GO:0002213) |
| 0.1 | 5.2 | GO:0009627 | systemic acquired resistance(GO:0009627) |
| 0.1 | 5.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 3.8 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.2 | 3.3 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.0 | 2.9 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.0 | 2.9 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 2.8 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
| 0.9 | 2.6 | GO:0045876 | positive regulation of sister chromatid cohesion(GO:0045876) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 12.0 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 8.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 3.6 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.1 | 2.6 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 2.3 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 1.9 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.0 | 1.5 | GO:0010319 | stromule(GO:0010319) |
| 0.4 | 1.1 | GO:0005658 | alpha DNA polymerase:primase complex(GO:0005658) |
| 0.0 | 0.9 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 0.8 | GO:0005677 | chromatin silencing complex(GO:0005677) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 6.5 | GO:0019137 | thioglucosidase activity(GO:0019137) |
| 0.4 | 4.8 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
| 0.1 | 4.6 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 3.8 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.4 | 3.6 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.0 | 2.5 | GO:0016831 | carboxy-lyase activity(GO:0016831) |
| 0.1 | 2.4 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 2.3 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.2 | 2.2 | GO:0043495 | protein anchor(GO:0043495) |
| 0.4 | 2.1 | GO:0004326 | tetrahydrofolylpolyglutamate synthase activity(GO:0004326) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 1.1 | REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND | Genes involved in Processive synthesis on the lagging strand |
| 0.1 | 0.7 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |