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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT2G31220

Z-value: 0.86

Transcription factors associated with AT2G31220

Gene Symbol Gene ID Gene Info
AT2G31220
AT2G31220 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT2G31220arTal_v1_Chr2_+_13302666_13302666-0.019.6e-01Click!

Activity profile of AT2G31220 motif

Sorted Z-values of AT2G31220 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_18098633 4.29 AT4G38770.1
PRP4
proline-rich protein 4
Chr3_+_5505360 4.04 AT3G16240.1
DELTA-TIP
delta tonoplast integral protein
Chr4_-_7493080 3.35 AT4G12730.1
FLA2
FASCICLIN-like arabinogalactan 2
Chr2_-_18744322 3.26 AT2G45470.1
FLA8
FASCICLIN-like arabinogalactan protein 8
Chr5_-_22560461 3.08 AT5G55730.2
AT5G55730.1
FLA1
FASCICLIN-like arabinogalactan 1
Chr5_+_4087689 2.85 AT5G12940.1
AT5G12940
Leucine-rich repeat (LRR) family protein
Chr4_-_17606924 2.80 AT4G37450.1
AT4G37450.2
AGP18
arabinogalactan protein 18
Chr3_-_8589754 2.71 AT3G23810.1
SAHH2
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr2_+_1676999 2.63 AT2G04780.2
FLA7
FASCICLIN-like arabinoogalactan 7
Chr2_+_1676717 2.56 AT2G04780.1
FLA7
FASCICLIN-like arabinoogalactan 7
Chr5_+_26767599 2.51 AT5G67070.1
RALFL34
ralf-like 34
Chr2_-_15474717 2.48 AT2G36870.2
AT2G36870.1
XTH32
xyloglucan endotransglucosylase/hydrolase 32
Chr3_+_23345754 2.44 AT3G63200.1
PLP9
PATATIN-like protein 9
Chr2_+_15059763 2.41 AT2G35860.1
FLA16
FASCICLIN-like arabinogalactan protein 16 precursor
Chr1_-_3880391 2.35 AT1G11545.1
XTH8
xyloglucan endotransglucosylase/hydrolase 8
Chr4_+_15401640 2.28 AT4G31840.1
ENODL15
early nodulin-like protein 15
Chr3_-_2334185 2.18 AT3G07320.1
AT3G07320
O-Glycosyl hydrolases family 17 protein
Chr4_+_9556783 2.14 AT4G16980.1
AT4G16980
arabinogalactan-protein family
Chr2_+_17592038 2.12 AT2G42220.1
AT2G42220
Rhodanese/Cell cycle control phosphatase superfamily protein
Chr1_-_4530222 2.08 AT1G13250.1
GATL3
galacturonosyltransferase-like 3
Chr1_-_15607966 2.08 AT1G41830.1
SKS6
SKU5-similar 6
Chr4_-_16806830 2.03 AT4G35320.1
AT4G35320
hypothetical protein
Chr5_+_6670275 1.98 AT5G19730.1
AT5G19730
Pectin lyase-like superfamily protein
Chr5_-_990630 1.98 AT5G03760.1
ATCSLA09
Nucleotide-diphospho-sugar transferases superfamily protein
Chr1_-_24023424 1.96 AT1G64640.1
ENODL8
early nodulin-like protein 8
Chr5_+_16768935 1.94 AT5G41900.1
AT5G41900
alpha/beta-Hydrolases superfamily protein
Chr3_-_4744263 1.94 AT3G14240.1
AT3G14240
Subtilase family protein
Chr3_-_23328789 1.93 AT3G63140.1
CSP41A
chloroplast stem-loop binding protein of 41 kDa
Chr1_-_6319427 1.93 AT1G18360.1
AT1G18360
alpha/beta-Hydrolases superfamily protein
Chr4_-_17181261 1.91 AT4G36360.2
BGAL3
beta-galactosidase 3
Chr5_+_16468327 1.91 AT5G41140.1
AT5G41140.2
AT5G41140
Myosin heavy chain-related protein
Chr4_-_17181466 1.90 AT4G36360.1
BGAL3
beta-galactosidase 3
Chr3_+_19417372 1.89 AT3G52370.2
AT3G52370.1
FLA15
FASCICLIN-like arabinogalactan protein 15 precursor
Chr3_+_17949416 1.86 AT3G48460.1
AT3G48460
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_-_24990331 1.85 AT5G62220.1
GT18
glycosyltransferase 18
Chr4_+_160643 1.82 AT4G00360.1
CYP86A2
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr2_-_5051613 1.81 AT2G12462.1
AT2G12462
sterile alpha motif (SAM) domain protein
Chr1_-_28581315 1.79 AT1G76160.1
sks5
SKU5 similar 5
Chr3_-_3108266 1.77 AT3G10080.1
AT3G10080.2
AT3G10080
RmlC-like cupins superfamily protein
Chr5_+_15742543 1.75 AT5G39320.1
UDG4
UDP-glucose 6-dehydrogenase family protein
Chr3_+_11252807 1.72 AT3G29320.1
PHS1
Glycosyl transferase, family 35
Chr5_-_8916856 1.71 AT5G25610.1
RD22
BURP domain-containing protein
Chr2_+_18626188 1.70 AT2G45180.1
AT2G45180
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_-_3518035 1.66 AT1G10640.1
AT1G10640
Pectin lyase-like superfamily protein
Chr4_-_13958107 1.63 AT4G28080.1
AT4G28080
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_+_8586359 1.63 AT3G23805.1
RALFL24
ralf-like 24
Chr1_-_1768837 1.61 AT1G05850.2
AT1G05850.1
POM1
Chitinase family protein
Chr4_-_14002069 1.59 AT4G28250.2
AT4G28250.3
AT4G28250.4
AT4G28250.1
EXPB3
expansin B3
Chr4_-_17979740 1.56 AT4G38400.1
AT4G38401.1
EXLA2
AT4G38401
expansin-like A2
hypothetical protein
Chr2_+_10662190 1.56 AT2G25060.1
ENODL14
early nodulin-like protein 14
Chr4_-_10278794 1.51 AT4G18670.1
AT4G18670
Leucine-rich repeat (LRR) family protein
Chr4_+_11907355 1.49 AT4G22620.1
AT4G22620
SAUR-like auxin-responsive protein family
Chr1_-_8559066 1.47 AT1G24170.1
LGT9
Nucleotide-diphospho-sugar transferases superfamily protein
Chr1_+_12188678 1.46 AT1G33610.1
AT1G33610
Leucine-rich repeat (LRR) family protein
Chr5_-_26845294 1.45 AT5G67280.1
RLK
receptor-like kinase
Chr3_+_6105908 1.44 AT3G17840.1
RLK902
receptor-like kinase 902
Chr1_-_8501542 1.39 AT1G24020.1
MLP423
MLP-like protein 423
Chr3_+_3011780 1.38 AT3G09820.1
ADK1
adenosine kinase 1
Chr3_+_10505711 1.37 AT3G28180.1
CSLC04
Cellulose-synthase-like C4
Chr1_-_18690503 1.37 AT1G50450.1
AT1G50450
Saccharopine dehydrogenase
Chr3_+_3012094 1.36 AT3G09820.2
ADK1
adenosine kinase 1
Chr5_+_3032375 1.36 AT5G09760.1
AT5G09760
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_-_9458176 1.35 AT1G27210.1
AT1G27210
ARM repeat superfamily protein
Chr3_-_6855513 1.35 AT3G19720.3
AT3G19720.2
AT3G19720.1
ARC5
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_+_72292 1.33 AT5G01190.2
AT5G01190.1
LAC10
laccase 10
Chr5_+_3032019 1.33 AT5G09760.2
AT5G09760
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_-_8502065 1.31 AT1G24020.2
MLP423
MLP-like protein 423
Chr3_+_7280792 1.30 AT3G20820.1
AT3G20820
Leucine-rich repeat (LRR) family protein
Chr3_-_18834834 1.29 AT3G50685.1
AT3G50685
anti-muellerian hormone type-2 receptor
Chr3_+_22151164 1.29 AT3G59970.3
AT3G59970.2
AT3G59970.1
MTHFR1
methylenetetrahydrofolate reductase 1
Chr1_-_1349478 1.29 AT1G04800.1
AT1G04800
glycine-rich protein
Chr5_-_17185032 1.28 AT5G42860.1
AT5G42860
late embryogenesis abundant protein, group 2
Chr3_+_288741 1.26 AT3G01810.2
AT3G01810
EEIG1/EHBP1 protein amino-terminal domain protein
Chr3_+_288538 1.26 AT3G01810.3
AT3G01810
EEIG1/EHBP1 protein amino-terminal domain protein
Chr3_+_288158 1.24 AT3G01810.1
AT3G01810
EEIG1/EHBP1 protein amino-terminal domain protein
Chr5_+_2271890 1.24 AT5G07240.2
AT5G07240.1
IQD24
IQ-domain 24
Chr2_-_5675995 1.23 AT2G13610.1
ABCG5
ABC-2 type transporter family protein
Chr4_-_11785937 1.23 AT4G22290.1
AT4G22290
Ubiquitin-specific protease family C19-related protein
Chr3_-_7434743 1.22 AT3G21190.1
MSR1
O-fucosyltransferase family protein
Chr2_-_14477520 1.22 AT2G34300.1
AT2G34300.3
AT2G34300
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_+_7680390 1.21 AT1G21880.2
AT1G21880.1
LYM1
lysm domain GPI-anchored protein 1 precursor
Chr2_+_14708243 1.17 AT2G34860.1
AT2G34860.2
EDA3
DnaJ/Hsp40 cysteine-rich domain superfamily protein
Chr5_+_24667873 1.16 AT5G61350.1
AT5G61350
Protein kinase superfamily protein
Chr1_-_10399873 1.15 AT1G29720.1
AT1G29720
Leucine-rich repeat transmembrane protein kinase
Chr4_-_16330212 1.15 AT4G34090.2
AT4G34090.3
AT4G34090.1
AT4G34090
cyclin delta-3
Chr2_+_19109513 1.12 AT2G46535.1
AT2G46535
hypothetical protein
Chr2_-_16573519 1.11 AT2G39730.3
RCA
rubisco activase
Chr2_-_16573692 1.11 AT2G39730.1
AT2G39730.2
RCA
rubisco activase
Chr1_-_18378634 1.10 AT1G49650.1
AT1G49650
alpha/beta-Hydrolases superfamily protein
Chr3_-_5227935 1.09 AT3G15480.1
AT3G15480
fiber (DUF1218)
Chr1_+_195812 1.09 AT1G01540.1
AT1G01540
Protein kinase superfamily protein
Chr1_+_195645 1.08 AT1G01540.2
AT1G01540
Protein kinase superfamily protein
Chr3_-_17138259 1.08 AT3G46550.1
SOS5
Fasciclin-like arabinogalactan family protein
Chr2_-_14477265 1.08 AT2G34300.2
AT2G34300
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_14304921 1.08 AT4G29020.2
AT4G29020.1
AT4G29020
glycine-rich protein
Chr5_+_25243405 1.08 AT5G62890.3
AT5G62890.1
AT5G62890
Xanthine/uracil permease family protein
Chr2_-_15084559 1.07 AT2G35930.1
PUB23
plant U-box 23
Chr5_+_17697842 1.06 AT5G43990.4
AT5G43990.10
AT5G43990.7
AT5G43990.6
AT5G43990.1
AT5G43990.11
AT5G43990.9
AT5G43990.8
AT5G43990.17
AT5G43990.13
AT5G43990.12
AT5G43990.15
AT5G43990.16
AT5G43990.14
AT5G43990.3
AT5G43990.2
SUVR2
SET-domain containing protein lysine methyltransferase family protein
Chr5_+_25243148 1.06 AT5G62890.2
AT5G62890.4
AT5G62890
Xanthine/uracil permease family protein
Chr3_-_5954091 1.04 AT3G17390.1
MTO3
S-adenosylmethionine synthetase family protein
Chr1_-_26293173 1.04 AT1G69830.1
AMY3
alpha-amylase-like 3
Chr5_-_1145008 1.01 AT5G04160.1
AT5G04160
Nucleotide-sugar transporter family protein
Chr2_-_183639 1.01 AT2G01420.3
AT2G01420.1
AT2G01420.2
PIN4
Auxin efflux carrier family protein
Chr5_+_25191860 1.00 AT5G62720.2
AT5G62720
Integral membrane HPP family protein
Chr5_+_25191402 1.00 AT5G62720.1
AT5G62720
Integral membrane HPP family protein
Chr2_+_14003128 0.99 AT2G32990.1
GH9B8
glycosyl hydrolase 9B8
Chr3_-_21805335 0.99 AT3G59010.1
PME61
pectin methylesterase 61
Chr1_-_25738134 0.99 AT1G68560.1
XYL1
alpha-xylosidase 1
Chr2_-_12415661 0.98 AT2G28900.1
OEP16-1
outer plastid envelope protein 16-1
Chr1_-_20357879 0.98 AT1G54500.1
AT1G54500
Rubredoxin-like superfamily protein
Chr1_-_22382422 0.97 AT1G60790.1
TBL2
trichome birefringence-like protein (DUF828)
Chr5_-_21154395 0.97 AT5G52060.1
BAG1
BCL-2-associated athanogene 1
Chr3_+_17311672 0.95 AT3G46990.1
AT3G46990
DUF740 family protein, putative (DUF740)
Chr2_-_15481377 0.95 AT2G36880.2
AT2G36880.1
MAT3
methionine adenosyltransferase 3
Chr2_+_10072057 0.95 AT2G23690.1
AT2G23690
HTH-type transcriptional regulator
Chr4_-_75384 0.93 AT4G00180.2
YAB3
Plant-specific transcription factor YABBY family protein
Chr4_-_75576 0.92 AT4G00180.1
YAB3
Plant-specific transcription factor YABBY family protein
Chr5_-_17635915 0.91 AT5G43870.1
AT5G43870.2
AT5G43870
auxin canalization protein (DUF828)
Chr4_+_15875342 0.91 AT4G32890.1
GATA9
GATA transcription factor 9
Chr1_+_22073352 0.91 AT1G59970.1
AT1G59970
Matrixin family protein
Chr1_-_25480431 0.91 AT1G67950.2
AT1G67950.1
AT1G67950.3
AT1G67950
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr5_+_2063414 0.90 AT5G06700.1
AT5G06700
trichome birefringence-like protein (DUF828)
Chr5_+_13934108 0.88 AT5G35760.1
AT5G35760
Beta-galactosidase related protein
Chr1_+_20061405 0.88 AT1G53730.2
AT1G53730.1
SRF6
STRUBBELIG-receptor family 6
Chr1_+_19708011 0.88 AT1G52910.1
AT1G52910
fiber (DUF1218)
Chr3_-_18277605 0.85 AT3G49300.1
AT3G49300
proline-rich family protein
Chr4_-_10016039 0.85 AT4G18030.1
AT4G18030
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr2_+_8920447 0.85 AT2G20680.1
MAN2
Glycosyl hydrolase superfamily protein
Chr1_+_95935 0.85 AT1G01225.1
AT1G01225
NC domain-containing protein-like protein
Chr4_-_17148496 0.84 AT4G36240.1
GATA7
GATA transcription factor 7
Chr2_+_18262189 0.84 AT2G44160.1
MTHFR2
methylenetetrahydrofolate reductase 2
Chr1_-_2562316 0.83 AT1G08165.1
AT1G08165
hypothetical protein
Chr3_+_6797471 0.81 AT3G19570.2
AT3G19570.3
AT3G19570.4
AT3G19570.1
SCO3
SNOWY COTYLEDON protein (DUF566)
Chr1_-_6860376 0.79 AT1G19835.1
AT1G19835.4
AT1G19835.6
AT1G19835.3
AT1G19835
filament-like protein (DUF869)
Chr1_+_10467956 0.79 AT1G29900.1
CARB
carbamoyl phosphate synthetase B
Chr3_+_8603212 0.79 AT3G23820.1
GAE6
UDP-D-glucuronate 4-epimerase 6
Chr5_-_17755742 0.78 AT5G44110.2
AT5G44110.4
AT5G44110.3
AT5G44110.1
ABCI21
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_-_4633925 0.77 AT5G14370.1
AT5G14370
CCT motif family protein
Chr1_-_25480176 0.77 AT1G67950.4
AT1G67950
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr5_-_18010542 0.77 AT5G44635.2
AT5G44635.1
MCM6
minichromosome maintenance (MCM2/3/5) family protein
Chr5_-_1352525 0.77 AT5G04690.1
AT5G04690.2
AT5G04690.3
AT5G04690
Ankyrin repeat family protein
Chr3_+_9122197 0.76 AT3G25030.4
AT3G25030.1
AT3G25030.2
AT3G25030
RING/U-box superfamily protein
Chr1_+_1198303 0.76 AT1G04430.3
AT1G04430.2
AT1G04430
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_18296388 0.75 AT4G39350.1
CESA2
cellulose synthase A2
Chr1_+_1197956 0.74 AT1G04430.1
AT1G04430
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_-_1178489 0.74 AT4G02670.1
AT4G02670.2
IDD12
indeterminate(ID)-domain 12
Chr3_+_2534776 0.74 AT3G07960.1
AT3G07960.3
AT3G07960.2
AT3G07960.4
PIP5K6
Phosphatidylinositol-4-phosphate 5-kinase family protein
Chr4_-_6796398 0.72 AT4G11140.1
CRF1
cytokinin response factor 1
Chr5_+_25881033 0.71 AT5G64740.1
CESA6
cellulose synthase 6
Chr2_-_17379059 0.71 AT2G41680.1
NTRC
NADPH-dependent thioredoxin reductase C
Chr1_-_6859908 0.71 AT1G19835.2
AT1G19835
filament-like protein (DUF869)
Chr5_-_22626420 0.71 AT5G55893.2
AT5G55893.3
AT5G55893.1
AT5G55893
hypothetical protein
Chr1_-_6860059 0.70 AT1G19835.5
AT1G19835
filament-like protein (DUF869)
Chr1_+_28750872 0.69 AT1G76610.1
AT1G76610
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr5_-_10282614 0.69 AT5G28290.3
AT5G28290.2
NEK3
NIMA-related kinase 3
Chr3_+_20518266 0.69 AT3G55350.1
AT3G55350
PIF / Ping-Pong family of plant transposase
Chr1_-_25514601 0.69 AT1G68060.1
MAP70-1
microtubule-associated proteins 70-1
Chr3_+_19271347 0.68 AT3G51930.1
AT3G51930
Transducin/WD40 repeat-like superfamily protein
Chr5_-_17861150 0.68 AT5G44340.1
TUB4
tubulin beta chain 4
Chr1_-_24139303 0.67 AT1G64980.3
AT1G64980.2
AT1G64980.1
CDI
Nucleotide-diphospho-sugar transferases superfamily protein
Chr1_+_17191362 0.65 AT1G45688.1
AT1G45688.2
AT1G45688
transmembrane protein
Chr3_-_545602 0.65 AT3G02570.1
MEE31
Mannose-6-phosphate isomerase, type I
Chr3_+_6710349 0.65 AT3G19370.3
AT3G19370.1
AT3G19370
filament-like protein (DUF869)
Chr5_+_6290358 0.65 AT5G18860.1
AT5G18860.2
NSH3
inosine-uridine preferring nucleoside hydrolase family protein
Chr2_+_15972876 0.65 AT2G38120.1
AT2G38120.2
AUX1
Transmembrane amino acid transporter family protein
Chr5_+_3799408 0.64 AT5G11790.2
AT5G11790.1
NDL2
N-MYC downregulated-like 2
Chr3_+_19393768 0.64 AT3G52290.1
IQD3
IQ-domain 3
Chr2_-_16649527 0.64 AT2G39880.1
MYB25
myb domain protein 25
Chr1_-_8995617 0.64 AT1G25570.1
AT1G25570
Di-glucose binding protein with Leucine-rich repeat domain-containing protein
Chr1_+_28970714 0.63 AT1G77110.1
AT1G77110.2
PIN6
Auxin efflux carrier family protein
Chr1_-_25022542 0.63 AT1G67040.1
TRM22
DnaA initiator-associating protein
Chr1_+_28458691 0.63 AT1G75800.1
AT1G75800
Pathogenesis-related thaumatin superfamily protein
Chr1_-_25022704 0.62 AT1G67040.2
TRM22
DnaA initiator-associating protein
Chr3_+_16432286 0.62 AT3G44970.1
AT3G44970.2
AT3G44970
Cytochrome P450 superfamily protein
Chr3_+_21238223 0.61 AT3G57400.1
AT3G57400
transmembrane protein
Chr1_+_5543119 0.61 AT1G16190.1
AT1G16190.2
RAD23A
Rad23 UV excision repair protein family
Chr3_-_1822858 0.60 AT3G06030.1
NP3
NPK1-related protein kinase 3
Chr3_+_20666887 0.60 AT3G55690.1
AT3G55690
hypothetical protein
Chr1_+_26464226 0.59 AT1G70270.2
AT1G70270.1
AT1G70270
transcription factor
Chr5_+_25850509 0.59 AT5G64667.1
IDL2
inflorescence deficient in abscission (IDA)-like 2
Chr3_-_2931289 0.59 AT3G09540.2
AT3G09540.3
AT3G09540.1
AT3G09540
Pectin lyase-like superfamily protein
Chr1_-_10313755 0.58 AT1G29470.2
AT1G29470
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_-_24514136 0.58 AT5G60920.2
COB
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Chr3_+_6710720 0.58 AT3G19370.2
AT3G19370
filament-like protein (DUF869)
Chr5_-_24514338 0.58 AT5G60920.1
COB
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Chr4_+_14082660 0.58 AT4G28500.1
NAC073
NAC domain containing protein 73
Chr1_-_10314147 0.58 AT1G29470.1
AT1G29470
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr2_+_15119516 0.57 AT2G36010.3
AT2G36010.1
AT2G36010.2
E2F3
E2F transcription factor 3
Chr4_-_15646844 0.57 AT4G32410.1
CESA1
cellulose synthase 1
Chr4_-_10464238 0.56 AT4G19120.3
AT4G19120.1
ERD3
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_+_4274531 0.56 AT1G12550.1
HPR3
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Chr3_+_21765879 0.55 AT3G58865.1
SADHU10-1

Chr4_+_13515432 0.55 AT4G26900.1
AT-HF
HIS HF
Chr2_-_11095542 0.54 AT2G26040.1
PYL2
PYR1-like 2
Chr4_-_6273442 0.53 AT4G10030.1
AT4G10030
alpha/beta-Hydrolases superfamily protein
Chr1_+_11084666 0.53 AT1G31070.1
AT1G31070.2
GlcNAc1pUT1
N-acetylglucosamine-1-phosphate uridylyltransferase 1
Chr1_-_25678468 0.52 AT1G68470.1
AT1G68470
Exostosin family protein
Chr2_+_18591628 0.52 AT2G45080.1
cycp3%3B1
cyclin p3;1
Chr1_+_1748259 0.52 AT1G05810.2
RABA5E
Rab GTPase-like A5A protein
Chr3_+_765420 0.51 AT3G03280.1
AT3G03280
hypothetical protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G31220

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.3 4.0 GO:0015840 urea transport(GO:0015840)
0.7 2.7 GO:0080094 response to trehalose-6-phosphate(GO:0080094)
0.7 2.7 GO:0046498 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.4 1.7 GO:0006024 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
0.4 2.0 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.3 1.7 GO:0005980 glycogen catabolic process(GO:0005980)
0.3 0.3 GO:0010253 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.2 0.7 GO:0006057 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506) response to cobalt ion(GO:0032025)
0.2 0.6 GO:0046102 inosine catabolic process(GO:0006148) inosine metabolic process(GO:0046102)
0.2 2.8 GO:0009554 megasporogenesis(GO:0009554)
0.2 0.6 GO:0048729 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.2 1.3 GO:0097502 mannosylation(GO:0097502)
0.2 1.1 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.2 3.4 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.2 0.8 GO:0044380 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.2 0.8 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.1 1.9 GO:0032544 plastid translation(GO:0032544)
0.1 1.9 GO:0010158 abaxial cell fate specification(GO:0010158)
0.1 1.0 GO:0043446 cellular alkane metabolic process(GO:0043446)
0.1 0.8 GO:0044205 'de novo' UMP biosynthetic process(GO:0044205)
0.1 2.0 GO:0010315 auxin efflux(GO:0010315)
0.1 0.7 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.1 1.3 GO:0016559 peroxisome fission(GO:0016559)
0.1 2.4 GO:0009086 methionine biosynthetic process(GO:0009086)
0.1 0.8 GO:1902969 mitotic DNA replication(GO:1902969)
0.1 0.9 GO:0051513 regulation of monopolar cell growth(GO:0051513)
0.1 1.1 GO:0022610 cell adhesion(GO:0007155) biological adhesion(GO:0022610)
0.1 0.5 GO:0052546 cell wall pectin metabolic process(GO:0052546)
0.1 0.4 GO:0031573 intra-S DNA damage checkpoint(GO:0031573)
0.1 1.2 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.1 5.3 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.1 1.6 GO:0006949 syncytium formation(GO:0006949)
0.1 2.0 GO:0009292 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.1 1.2 GO:0048564 photosystem I assembly(GO:0048564)
0.1 0.8 GO:0050898 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.1 1.4 GO:0080188 RNA-directed DNA methylation(GO:0080188)
0.1 6.1 GO:0045490 pectin catabolic process(GO:0045490)
0.1 5.6 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.1 3.0 GO:0045489 pectin biosynthetic process(GO:0045489)
0.1 0.4 GO:0051754 meiotic sister chromatid cohesion, centromeric(GO:0051754)
0.1 0.7 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.1 2.1 GO:0043622 cortical microtubule organization(GO:0043622)
0.1 1.0 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.1 1.5 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.1 0.3 GO:0006569 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.1 0.4 GO:0070979 protein K11-linked ubiquitination(GO:0070979)
0.1 0.8 GO:0071329 cellular response to sucrose stimulus(GO:0071329)
0.1 0.6 GO:0051446 positive regulation of meiotic cell cycle(GO:0051446)
0.1 0.5 GO:0010358 leaf shaping(GO:0010358)
0.0 0.7 GO:0010274 hydrotropism(GO:0010274)
0.0 1.0 GO:0071218 cellular response to misfolded protein(GO:0071218)
0.0 1.0 GO:0005983 starch catabolic process(GO:0005983)
0.0 0.1 GO:0010338 leaf formation(GO:0010338)
0.0 0.2 GO:1903321 negative regulation of protein modification by small protein conjugation or removal(GO:1903321)
0.0 0.1 GO:0010028 xanthophyll cycle(GO:0010028)
0.0 0.3 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.0 1.3 GO:0010089 xylem development(GO:0010089)
0.0 0.4 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.0 3.0 GO:0019722 calcium-mediated signaling(GO:0019722)
0.0 1.0 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.0 0.5 GO:0052803 histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803)
0.0 0.2 GO:0071786 endoplasmic reticulum tubular network organization(GO:0071786)
0.0 0.4 GO:0010115 regulation of abscisic acid biosynthetic process(GO:0010115)
0.0 1.3 GO:0051225 spindle assembly(GO:0051225)
0.0 0.3 GO:0052548 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.0 0.3 GO:0080086 stamen filament development(GO:0080086)
0.0 0.5 GO:0031425 chloroplast RNA processing(GO:0031425)
0.0 0.7 GO:0010227 floral organ abscission(GO:0010227)
0.0 0.3 GO:0051865 protein autoubiquitination(GO:0051865)
0.0 0.5 GO:1900865 chloroplast RNA modification(GO:1900865)
0.0 0.6 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.0 0.4 GO:0009299 mRNA transcription(GO:0009299)
0.0 0.6 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.0 0.3 GO:0009861 jasmonic acid and ethylene-dependent systemic resistance(GO:0009861)
0.0 0.8 GO:0009682 induced systemic resistance(GO:0009682)
0.0 0.1 GO:0019932 second-messenger-mediated signaling(GO:0019932)
0.0 0.2 GO:0048209 regulation of vesicle targeting, to, from or within Golgi(GO:0048209)
0.0 0.6 GO:0009825 multidimensional cell growth(GO:0009825)
0.0 0.5 GO:0099518 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.0 0.3 GO:0051568 histone H3-K4 methylation(GO:0051568)
0.0 0.2 GO:0009704 de-etiolation(GO:0009704)
0.0 0.1 GO:0080117 secondary growth(GO:0080117)
0.0 0.2 GO:0046739 movement in host(GO:0044000) transport of virus in multicellular host(GO:0046739) movement in other organism involved in symbiotic interaction(GO:0051814) movement in host environment(GO:0052126) movement in environment of other organism involved in symbiotic interaction(GO:0052192)
0.0 0.6 GO:0006289 nucleotide-excision repair(GO:0006289)
0.0 0.4 GO:2000031 regulation of salicylic acid mediated signaling pathway(GO:2000031)
0.0 0.6 GO:0046916 cellular transition metal ion homeostasis(GO:0046916)
0.0 0.7 GO:0048825 cotyledon development(GO:0048825)
0.0 0.7 GO:0009846 pollen germination(GO:0009846)
0.0 0.3 GO:0009269 response to desiccation(GO:0009269)
0.0 0.2 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 0.6 GO:0009853 photorespiration(GO:0009853)
0.0 0.2 GO:0015833 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.0 0.1 GO:0006513 protein monoubiquitination(GO:0006513)
0.0 0.3 GO:0000027 ribosomal large subunit assembly(GO:0000027)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 2.2 GO:0009897 external side of plasma membrane(GO:0009897)
0.3 1.2 GO:0010330 cellulose synthase complex(GO:0010330)
0.3 3.0 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.1 19.8 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.1 0.4 GO:0030896 checkpoint clamp complex(GO:0030896)
0.1 0.3 GO:1990752 microtubule end(GO:1990752)
0.1 4.1 GO:0010319 stromule(GO:0010319)
0.1 5.0 GO:0005797 Golgi medial cisterna(GO:0005797)
0.1 0.8 GO:0042555 MCM complex(GO:0042555)
0.1 1.9 GO:0055028 cortical microtubule(GO:0055028)
0.1 0.8 GO:0005880 nuclear microtubule(GO:0005880)
0.1 0.4 GO:0005828 condensed nuclear chromosome kinetochore(GO:0000778) kinetochore microtubule(GO:0005828)
0.1 0.7 GO:0045298 tubulin complex(GO:0045298)
0.0 4.2 GO:0000138 Golgi trans cisterna(GO:0000138)
0.0 0.6 GO:0009986 cell surface(GO:0009986)
0.0 12.0 GO:0048046 apoplast(GO:0048046)
0.0 2.3 GO:0009707 chloroplast outer membrane(GO:0009707)
0.0 14.2 GO:0030312 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 0.7 GO:0016324 apical plasma membrane(GO:0016324)
0.0 0.1 GO:0043240 Fanconi anaemia nuclear complex(GO:0043240)
0.0 0.3 GO:0005769 early endosome(GO:0005769)
0.0 2.4 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.0 0.5 GO:0005871 kinesin complex(GO:0005871)
0.0 0.4 GO:0009508 plastid chromosome(GO:0009508)
0.0 1.4 GO:0010008 endosome membrane(GO:0010008)
0.0 6.2 GO:0009534 chloroplast thylakoid(GO:0009534)
0.0 0.2 GO:0071782 endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827)
0.0 0.3 GO:0000178 exosome (RNase complex)(GO:0000178)
0.0 1.6 GO:0031225 anchored component of membrane(GO:0031225)
0.0 0.4 GO:0005680 anaphase-promoting complex(GO:0005680)
0.0 0.3 GO:0015934 large ribosomal subunit(GO:0015934)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.3 4.0 GO:0015204 ammonium transmembrane transporter activity(GO:0008519) urea transmembrane transporter activity(GO:0015204)
0.9 2.7 GO:0004013 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.6 1.3 GO:0019187 beta-1,4-mannosyltransferase activity(GO:0019187) mannan synthase activity(GO:0051753)
0.5 2.7 GO:0004001 adenosine kinase activity(GO:0004001)
0.5 1.8 GO:0070330 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.4 1.7 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.4 2.0 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
0.3 1.7 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.3 1.0 GO:0004556 alpha-amylase activity(GO:0004556)
0.3 0.8 GO:1990518 ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518)
0.2 2.1 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.2 0.7 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.2 0.6 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.2 0.5 GO:0004359 glutaminase activity(GO:0004359)
0.2 1.2 GO:0016681 ubiquinol-cytochrome-c reductase activity(GO:0008121) oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor(GO:0016681)
0.2 2.0 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.2 0.6 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.2 3.8 GO:0004565 beta-galactosidase activity(GO:0004565)
0.1 4.8 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.1 2.9 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.1 0.8 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.1 1.0 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.1 4.1 GO:0005179 hormone activity(GO:0005179)
0.1 1.6 GO:0080161 auxin efflux transmembrane transporter activity(GO:0010329) auxin transmembrane transporter activity(GO:0080161)
0.1 3.3 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 1.0 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.1 0.3 GO:0051010 microtubule plus-end binding(GO:0051010)
0.1 0.5 GO:0034511 U3 snoRNA binding(GO:0034511)
0.1 0.7 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)
0.1 0.3 GO:0047150 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150)
0.1 0.5 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.1 3.5 GO:0045735 nutrient reservoir activity(GO:0045735)
0.1 1.0 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.1 1.0 GO:0046556 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.1 1.9 GO:0008810 cellulase activity(GO:0008810)
0.1 0.3 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.1 4.2 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.1 1.9 GO:0008266 poly(U) RNA binding(GO:0008266)
0.1 1.3 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.1 2.1 GO:0016759 cellulose synthase activity(GO:0016759)
0.1 0.7 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.1 0.8 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.0 2.5 GO:0001871 pattern binding(GO:0001871) polysaccharide binding(GO:0030247)
0.0 1.6 GO:0018024 histone-lysine N-methyltransferase activity(GO:0018024)
0.0 0.6 GO:0070628 proteasome binding(GO:0070628)
0.0 0.7 GO:0030599 pectinesterase activity(GO:0030599)
0.0 0.1 GO:0005315 inorganic phosphate transmembrane transporter activity(GO:0005315)
0.0 4.2 GO:0008017 microtubule binding(GO:0008017)
0.0 0.4 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.3 GO:0070180 large ribosomal subunit rRNA binding(GO:0070180)
0.0 3.6 GO:0009055 electron carrier activity(GO:0009055)
0.0 0.6 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 1.1 GO:0008408 3'-5' exonuclease activity(GO:0008408)
0.0 0.7 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.0 3.3 GO:0005507 copper ion binding(GO:0005507)
0.0 2.2 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.2 GO:1904680 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.0 0.3 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.0 0.2 GO:0016273 arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274)
0.0 0.5 GO:0000146 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.0 0.2 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.0 0.4 GO:0060090 binding, bridging(GO:0060090)
0.0 0.2 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 0.2 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.0 0.4 GO:0004707 MAP kinase activity(GO:0004707)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.0 PID AP1 PATHWAY AP-1 transcription factor network
0.1 0.4 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.1 0.6 PID MYC ACTIV PATHWAY Validated targets of C-MYC transcriptional activation

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.2 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.2 0.6 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing
0.1 0.4 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.1 0.8 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA