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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G31220
Z-value: 0.86
Transcription factors associated with AT2G31220
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G31220
|
AT2G31220 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT2G31220 | arTal_v1_Chr2_+_13302666_13302666 | -0.01 | 9.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 4.29 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 4.04 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 3.35 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 3.26 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 3.08 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr5_+_4087689_4087689 Show fit | 2.85 |
AT5G12940.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr4_-_17606924_17607050 Show fit | 2.80 |
AT4G37450.1
AT4G37450.2 |
arabinogalactan protein 18 |
|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 2.71 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
|
| arTal_v1_Chr2_+_1676999_1676999 Show fit | 2.63 |
AT2G04780.2
|
FASCICLIN-like arabinoogalactan 7 |
|
| arTal_v1_Chr2_+_1676717_1676717 Show fit | 2.56 |
AT2G04780.1
|
FASCICLIN-like arabinoogalactan 7 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G31220
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 5.6 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.1 | 5.3 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 1.3 | 4.0 | GO:0015840 | urea transport(GO:0015840) |
| 0.2 | 3.4 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.1 | 3.0 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.0 | 3.0 | GO:0019722 | calcium-mediated signaling(GO:0019722) |
| 0.2 | 2.8 | GO:0009554 | megasporogenesis(GO:0009554) |
| 0.7 | 2.7 | GO:0080094 | response to trehalose-6-phosphate(GO:0080094) |
| 0.7 | 2.7 | GO:0046498 | S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 19.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 14.2 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 12.0 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 6.2 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 5.0 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.0 | 4.2 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.1 | 4.1 | GO:0010319 | stromule(GO:0010319) |
| 0.3 | 3.0 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 2.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 2.3 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.8 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 4.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.0 | 4.2 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.1 | 4.1 | GO:0005179 | hormone activity(GO:0005179) |
| 1.3 | 4.0 | GO:0015204 | ammonium transmembrane transporter activity(GO:0008519) urea transmembrane transporter activity(GO:0015204) |
| 0.2 | 3.8 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.0 | 3.6 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 3.5 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.1 | 3.3 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.0 | 3.3 | GO:0005507 | copper ion binding(GO:0005507) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.1 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.2 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 0.8 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 0.6 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 0.4 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |