GSE43616: Time-course of wild-type Arabidopsis leaf
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT2G30250
|
AT2G30250 | WRKY DNA-binding protein 25 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
WRKY25 | arTal_v1_Chr2_-_12905338_12905338 | 0.90 | 8.8e-11 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr3_+_15983199_15983199 Show fit | 17.88 |
AT3G44300.1
|
nitrilase 2 |
|
arTal_v1_Chr3_-_6258426_6258426 Show fit | 14.47 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
arTal_v1_Chr3_-_20769324_20769410 Show fit | 14.04 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
arTal_v1_Chr1_-_27548282_27548282 Show fit | 13.96 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
arTal_v1_Chr2_+_18641563_18641563 Show fit | 13.33 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
arTal_v1_Chr1_-_9131779_9131779 Show fit | 13.10 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
arTal_v1_Chr2_+_18066960_18066960 Show fit | 12.98 |
AT2G43510.1
|
trypsin inhibitor protein 1 |
|
arTal_v1_Chr5_+_16290386_16290386 Show fit | 12.82 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
arTal_v1_Chr1_+_10892445_10892445 Show fit | 12.75 |
AT1G30700.1
|
FAD-binding Berberine family protein |
|
arTal_v1_Chr2_-_13101371_13101371 Show fit | 12.57 |
AT2G30750.1
|
cytochrome P450 family 71 polypeptide |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 80.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
0.5 | 56.2 | GO:0010200 | response to chitin(GO:0010200) |
3.3 | 52.6 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
0.5 | 45.3 | GO:0010150 | leaf senescence(GO:0010150) |
0.8 | 39.9 | GO:0006623 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
0.9 | 39.3 | GO:0090487 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
0.8 | 35.4 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
0.8 | 27.8 | GO:0010252 | auxin homeostasis(GO:0010252) |
0.1 | 27.0 | GO:0016567 | protein ubiquitination(GO:0016567) |
0.6 | 26.3 | GO:0002239 | response to oomycetes(GO:0002239) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 281.3 | GO:0005886 | plasma membrane(GO:0005886) |
0.4 | 39.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
0.1 | 30.1 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.3 | 22.6 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.1 | 21.6 | GO:0098791 | Golgi subcompartment(GO:0098791) |
1.3 | 20.2 | GO:0005801 | cis-Golgi network(GO:0005801) |
0.1 | 19.9 | GO:0005774 | vacuolar membrane(GO:0005774) |
0.5 | 19.0 | GO:0009504 | cell plate(GO:0009504) |
2.0 | 18.0 | GO:0017119 | Golgi transport complex(GO:0017119) |
0.3 | 17.2 | GO:0005770 | late endosome(GO:0005770) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 61.2 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
0.7 | 42.1 | GO:0004364 | glutathione transferase activity(GO:0004364) |
4.8 | 33.7 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
0.5 | 30.9 | GO:0051213 | dioxygenase activity(GO:0051213) |
0.2 | 30.7 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
1.4 | 28.5 | GO:0030414 | peptidase inhibitor activity(GO:0030414) |
1.9 | 28.3 | GO:0003978 | UDP-glucose 4-epimerase activity(GO:0003978) |
0.4 | 26.7 | GO:0019901 | protein kinase binding(GO:0019901) |
0.7 | 25.4 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
0.1 | 24.1 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.1 | 14.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
2.0 | 9.9 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
1.1 | 5.4 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
0.5 | 3.4 | PID P73PATHWAY | p73 transcription factor network |
0.4 | 3.0 | PID MTOR 4PATHWAY | mTOR signaling pathway |
0.4 | 2.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.8 | 1.6 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
0.6 | 0.6 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
0.3 | 0.5 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
0.2 | 0.5 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.4 | 11.1 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.6 | 8.6 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
2.0 | 8.0 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
0.9 | 5.6 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.8 | 4.5 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
1.5 | 4.4 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
1.2 | 3.6 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
0.3 | 3.5 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.8 | 3.1 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
0.5 | 2.7 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |