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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G28810
Z-value: 1.21
Transcription factors associated with AT2G28810
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G28810
|
AT2G28810 | Dof-type zinc finger DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT2G28810 | arTal_v1_Chr2_+_12363426_12363456 | 0.32 | 9.6e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 4.63 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr2_-_18077517_18077517 Show fit | 4.23 |
AT2G43570.1
|
chitinase |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 4.14 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr2_+_6213972_6213972 Show fit | 3.89 |
AT2G14560.2
AT2G14560.1 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr5_+_24608605_24608605 Show fit | 3.87 |
AT5G61160.1
|
anthocyanin 5-aromatic acyltransferase 1 |
|
| arTal_v1_Chr2_+_6213617_6213676 Show fit | 3.79 |
AT2G14560.3
AT2G14560.4 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr4_+_6491017_6491017 Show fit | 3.73 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr3_+_19239305_19239412 Show fit | 3.67 |
AT3G51860.1
AT3G51860.2 |
cation exchanger 3 |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 3.65 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr5_-_3402389_3402389 Show fit | 3.56 |
AT5G10760.1
|
Eukaryotic aspartyl protease family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G28810
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 51.4 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 19.7 | GO:0006979 | response to oxidative stress(GO:0006979) |
| 0.2 | 19.0 | GO:0010150 | leaf senescence(GO:0010150) |
| 0.1 | 16.2 | GO:0046777 | protein autophosphorylation(GO:0046777) |
| 0.1 | 15.9 | GO:0071456 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.3 | 14.7 | GO:0009407 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.1 | 14.6 | GO:0050832 | defense response to fungus(GO:0050832) |
| 2.5 | 12.7 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.3 | 12.3 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.6 | 12.0 | GO:0010112 | regulation of systemic acquired resistance(GO:0010112) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 73.9 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 43.8 | GO:0005773 | vacuole(GO:0005773) |
| 0.0 | 25.4 | GO:0005739 | mitochondrion(GO:0005739) |
| 0.0 | 21.5 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.2 | 16.3 | GO:0016604 | nuclear body(GO:0016604) |
| 0.1 | 15.3 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 14.7 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 14.1 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.6 | 12.1 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 11.9 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 31.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.2 | 29.0 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 27.2 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 20.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 19.7 | GO:0000976 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.3 | 19.3 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.2 | 18.1 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.3 | 15.7 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.1 | 13.9 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 13.8 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 2.7 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.5 | 2.3 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.5 | 2.1 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.3 | 1.7 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.3 | 1.6 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.3 | 1.6 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.4 | 1.4 | PID FAK PATHWAY | Signaling events mediated by focal adhesion kinase |
| 0.2 | 1.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.5 | 1.0 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.3 | 1.0 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 4.6 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.6 | 3.2 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.1 | 2.9 | REACTOME TRANSMEMBRANE TRANSPORT OF SMALL MOLECULES | Genes involved in Transmembrane transport of small molecules |
| 0.7 | 2.7 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.4 | 1.9 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 1.8 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.5 | 1.4 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
| 0.4 | 1.3 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.1 | 1.3 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.4 | 1.2 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |