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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G26960
Z-value: 0.39
Transcription factors associated with AT2G26960
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G26960
|
AT2G26960 | myb domain protein 81 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB81 | arTal_v1_Chr2_-_11507426_11507426 | -0.31 | 1.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_6612630_6612630 Show fit | 1.03 |
AT1G19150.1
|
PSI type II chlorophyll a/b-binding protein (Lhca2*1) |
|
| arTal_v1_Chr3_+_17228642_17228642 Show fit | 0.97 |
AT3G46780.1
|
plastid transcriptionally active 16 |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 0.96 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr1_-_10473502_10473502 Show fit | 0.93 |
AT1G29910.1
|
chlorophyll A/B binding protein 3 |
|
| arTal_v1_Chr2_+_2199151_2199151 Show fit | 0.77 |
AT2G05790.1
|
O-Glycosyl hydrolases family 17 protein |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 0.75 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr1_+_10477885_10477885 Show fit | 0.74 |
AT1G29930.1
|
chlorophyll A/B binding protein 1 |
|
| arTal_v1_Chr4_-_12400231_12400231 Show fit | 0.72 |
AT4G23820.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr5_+_17760865_17760865 Show fit | 0.72 |
AT5G44130.1
|
FASCICLIN-like arabinogalactan protein 13 precursor |
|
| arTal_v1_Chr5_-_8707885_8707885 Show fit | 0.71 |
AT5G25190.1
|
Integrase-type DNA-binding superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G26960
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.1 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.1 | 2.3 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.0 | 1.8 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.0 | 1.3 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.2 | 1.2 | GO:0070982 | L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982) |
| 0.3 | 1.0 | GO:0045876 | positive regulation of sister chromatid cohesion(GO:0045876) |
| 0.2 | 0.9 | GO:0043447 | alkane biosynthetic process(GO:0043447) |
| 0.1 | 0.9 | GO:1902290 | positive regulation of defense response to oomycetes(GO:1902290) |
| 0.0 | 0.9 | GO:0042335 | cuticle development(GO:0042335) |
| 0.2 | 0.8 | GO:0033306 | phytol metabolic process(GO:0033306) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.6 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.0 | 4.5 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 4.1 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 2.9 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 1.6 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 1.3 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 1.2 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 1.0 | GO:0009508 | plastid chromosome(GO:0009508) |
| 0.1 | 0.9 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.1 | 0.9 | GO:0072686 | mitotic spindle(GO:0072686) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.9 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 1.7 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.0 | 1.4 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.0 | 1.4 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.4 | 1.2 | GO:0004071 | aspartate-ammonia ligase activity(GO:0004071) |
| 0.1 | 1.2 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 1.1 | GO:0015562 | efflux transmembrane transporter activity(GO:0015562) |
| 0.0 | 1.1 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 1.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 1.0 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.9 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.6 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.1 | 0.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.3 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.0 | 0.3 | PID ATR PATHWAY | ATR signaling pathway |
| 0.0 | 0.2 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.0 | 0.1 | PID AVB3 OPN PATHWAY | Osteopontin-mediated events |
| 0.0 | 0.1 | PID REELIN PATHWAY | Reelin signaling pathway |
| 0.0 | 0.1 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.0 | 0.1 | PID CMYB PATHWAY | C-MYB transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.9 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.1 | 0.5 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.1 | 0.4 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.1 | 0.3 | REACTOME PHOSPHORYLATION OF CD3 AND TCR ZETA CHAINS | Genes involved in Phosphorylation of CD3 and TCR zeta chains |
| 0.1 | 0.3 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.0 | 0.3 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.1 | 0.2 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.2 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.0 | 0.2 | REACTOME POST TRANSLATIONAL PROTEIN MODIFICATION | Genes involved in Post-translational protein modification |
| 0.0 | 0.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |