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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G24430
Z-value: 1.20
Transcription factors associated with AT2G24430
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G24430
|
AT2G24430 | NAC domain containing protein 38 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC038 | arTal_v1_Chr2_-_10386480_10386625 | 0.35 | 6.8e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_6976036_6976036 Show fit | 2.18 |
AT5G20630.1
|
germin 3 |
|
| arTal_v1_Chr3_+_5681380_5681380 Show fit | 2.06 |
AT3G16670.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr5_+_1153740_1153740 Show fit | 1.92 |
AT5G04200.1
|
metacaspase 9 |
|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 1.92 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr2_-_17827648_17827648 Show fit | 1.90 |
AT2G42840.1
|
protodermal factor 1 |
|
| arTal_v1_Chr2_-_9062093_9062093 Show fit | 1.90 |
AT2G21140.1
|
proline-rich protein 2 |
|
| arTal_v1_Chr1_+_175706_175706 Show fit | 1.78 |
AT1G01480.1
|
1-amino-cyclopropane-1-carboxylate synthase 2 |
|
| arTal_v1_Chr1_+_176141_176141 Show fit | 1.76 |
AT1G01480.2
|
1-amino-cyclopropane-1-carboxylate synthase 2 |
|
| arTal_v1_Chr1_+_5822309_5822309 Show fit | 1.76 |
AT1G17030.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_1940463_1940496 Show fit | 1.65 |
AT1G06360.1
AT1G06360.2 |
Fatty acid desaturase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G24430
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.4 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 4.5 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.7 | 3.7 | GO:0042218 | 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218) |
| 0.0 | 3.2 | GO:0043086 | negative regulation of catalytic activity(GO:0043086) |
| 0.7 | 2.9 | GO:1901600 | lactone metabolic process(GO:1901334) lactone biosynthetic process(GO:1901336) strigolactone metabolic process(GO:1901600) strigolactone biosynthetic process(GO:1901601) |
| 0.1 | 2.8 | GO:0010227 | floral organ abscission(GO:0010227) |
| 0.1 | 2.8 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.1 | 2.5 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 0.1 | 2.2 | GO:0010252 | auxin homeostasis(GO:0010252) |
| 0.1 | 2.1 | GO:0043449 | ethylene metabolic process(GO:0009692) ethylene biosynthetic process(GO:0009693) cellular alkene metabolic process(GO:0043449) alkene biosynthetic process(GO:0043450) olefin metabolic process(GO:1900673) olefin biosynthetic process(GO:1900674) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 13.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 8.1 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 6.2 | GO:0048046 | apoplast(GO:0048046) |
| 0.3 | 5.7 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 2.7 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 1.7 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 1.7 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
| 0.0 | 1.7 | GO:0005770 | late endosome(GO:0005770) |
| 0.1 | 1.6 | GO:0000781 | chromosome, telomeric region(GO:0000781) |
| 0.0 | 1.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.3 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.5 | 5.8 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.4 | 3.6 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 0.2 | 3.5 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.1 | 3.3 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.1 | 3.1 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.1 | 2.9 | GO:0005179 | hormone activity(GO:0005179) |
| 0.0 | 2.7 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 2.5 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 2.5 | GO:0003779 | actin binding(GO:0003779) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.6 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.2 | 0.7 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.7 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.2 | 0.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.5 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.3 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.0 | 0.1 | PID ATM PATHWAY | ATM pathway |
| 0.0 | 0.1 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.5 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.2 | 1.0 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.2 | 0.7 | REACTOME PKB MEDIATED EVENTS | Genes involved in PKB-mediated events |
| 0.1 | 0.7 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.7 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.0 | 0.6 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.1 | 0.5 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.5 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
| 0.1 | 0.5 | REACTOME CLASS I MHC MEDIATED ANTIGEN PROCESSING PRESENTATION | Genes involved in Class I MHC mediated antigen processing & presentation |
| 0.1 | 0.3 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |