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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G23340
Z-value: 1.79
Transcription factors associated with AT2G23340
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G23340
|
AT2G23340 | DREB and EAR motif protein 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DEAR3 | arTal_v1_Chr2_+_9937792_9937792 | -0.21 | 2.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 13.56 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 13.39 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 10.81 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 10.47 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 10.05 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr5_+_26298728_26298728 Show fit | 10.03 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
|
| arTal_v1_Chr2_+_2763449_2763513 Show fit | 9.37 |
AT2G06850.1
AT2G06850.2 |
xyloglucan endotransglucosylase/hydrolase 4 |
|
| arTal_v1_Chr5_+_26767599_26767599 Show fit | 8.54 |
AT5G67070.1
|
ralf-like 34 |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 8.53 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr5_+_625254_625254 Show fit | 8.48 |
AT5G02760.1
|
Protein phosphatase 2C family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G23340
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 38.5 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.4 | 31.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 1.3 | 23.9 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.3 | 23.4 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.9 | 21.5 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.5 | 18.0 | GO:0005991 | trehalose metabolic process(GO:0005991) |
| 1.0 | 16.3 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.2 | 14.7 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 1.7 | 13.6 | GO:0043489 | RNA stabilization(GO:0043489) |
| 0.2 | 13.6 | GO:0007018 | microtubule-based movement(GO:0007018) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 166.6 | GO:0005576 | extracellular region(GO:0005576) |
| 0.3 | 72.2 | GO:0048046 | apoplast(GO:0048046) |
| 0.4 | 59.7 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 55.8 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.3 | 54.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 26.0 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 18.7 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.3 | 17.4 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.4 | 17.0 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.2 | 16.1 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 33.5 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.2 | 32.7 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.0 | 25.6 | GO:0004672 | protein kinase activity(GO:0004672) |
| 0.7 | 23.1 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.2 | 21.9 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.8 | 21.5 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.7 | 19.0 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.6 | 19.0 | GO:0005179 | hormone activity(GO:0005179) |
| 0.3 | 18.7 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 16.8 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 9.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.4 | 3.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.5 | 2.9 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.8 | 2.3 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.5 | 2.0 | PID BCR 5PATHWAY | BCR signaling pathway |
| 0.2 | 2.0 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.2 | 1.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.3 | 1.0 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.3 | 0.9 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 6.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.9 | 6.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.6 | 3.8 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 1.1 | 3.4 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.4 | 3.3 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.4 | 2.9 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.7 | 2.0 | REACTOME TCR SIGNALING | Genes involved in TCR signaling |
| 0.7 | 2.0 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.6 | 1.9 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
| 0.5 | 1.4 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |