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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G23320
Z-value: 1.26
Transcription factors associated with AT2G23320
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G23320
|
AT2G23320 | WRKY DNA-binding protein 15 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY15 | arTal_v1_Chr2_+_9924886_9924933 | 0.79 | 5.7e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 5.65 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 4.47 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 4.46 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 4.44 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 4.38 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr4_+_8392825_8392825 Show fit | 4.37 |
AT4G14630.1
|
germin-like protein 9 |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 4.35 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 4.14 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 4.10 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr2_+_18066960_18066960 Show fit | 4.08 |
AT2G43510.1
|
trypsin inhibitor protein 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G23320
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 59.3 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 33.8 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.4 | 19.4 | GO:0090487 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.4 | 17.5 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.4 | 17.5 | GO:0006623 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.2 | 17.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.3 | 14.7 | GO:0006874 | cellular calcium ion homeostasis(GO:0006874) cellular divalent inorganic cation homeostasis(GO:0072503) |
| 0.3 | 13.0 | GO:0034620 | cellular response to unfolded protein(GO:0034620) |
| 1.1 | 12.9 | GO:1900057 | positive regulation of leaf senescence(GO:1900057) |
| 0.2 | 12.7 | GO:0016579 | protein deubiquitination(GO:0016579) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 69.5 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 30.1 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.2 | 21.1 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.2 | 14.5 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.2 | 9.9 | GO:0010008 | endosome membrane(GO:0010008) |
| 0.2 | 8.4 | GO:0009504 | cell plate(GO:0009504) |
| 0.1 | 8.3 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 8.1 | GO:0005681 | spliceosomal complex(GO:0005681) |
| 0.1 | 7.8 | GO:0000785 | chromatin(GO:0000785) |
| 0.3 | 7.7 | GO:0031307 | intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 38.3 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 24.7 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 24.4 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.2 | 21.1 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 20.1 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.3 | 19.0 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.1 | 15.6 | GO:0003779 | actin binding(GO:0003779) |
| 0.6 | 14.0 | GO:0030414 | peptidase inhibitor activity(GO:0030414) |
| 0.2 | 12.8 | GO:0005096 | GTPase activator activity(GO:0005096) |
| 0.2 | 12.2 | GO:0036459 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 3.3 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.3 | 3.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.5 | 2.9 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.3 | 2.4 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.8 | 2.3 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.7 | 2.0 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.3 | 1.8 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.1 | 1.0 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.3 | 0.8 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.2 | 0.7 | PID IL4 2PATHWAY | IL4-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 6.5 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.2 | 6.5 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.6 | 4.8 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.7 | 4.3 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.6 | 4.2 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.7 | 2.7 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.3 | 2.7 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.6 | 2.5 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.6 | 1.7 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.2 | 1.7 | REACTOME BASE EXCISION REPAIR | Genes involved in Base Excision Repair |