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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G23290
Z-value: 1.56
Transcription factors associated with AT2G23290
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G23290
|
AT2G23290 | myb domain protein 70 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB70 | arTal_v1_Chr2_-_9906032_9906032 | -0.51 | 5.4e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 7.04 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 6.70 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 6.40 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 6.04 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr1_-_24606722_24606722 Show fit | 5.92 |
AT1G66100.1
|
Plant thionin |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 5.82 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 5.75 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 5.71 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 5.45 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 5.44 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G23290
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 30.8 | GO:0006949 | syncytium formation(GO:0006949) |
| 1.3 | 23.1 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 1.1 | 19.4 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.4 | 18.5 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.2 | 15.8 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 15.1 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 1.7 | 10.4 | GO:1903428 | photosynthesis, light harvesting in photosystem II(GO:0009769) positive regulation of reactive oxygen species biosynthetic process(GO:1903428) |
| 0.3 | 10.2 | GO:0006284 | base-excision repair(GO:0006284) |
| 0.2 | 9.8 | GO:0016145 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.2 | 9.7 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 151.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.3 | 87.7 | GO:0031976 | plastid thylakoid(GO:0031976) |
| 0.3 | 45.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 42.6 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.2 | 38.7 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 38.6 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.7 | 33.9 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.5 | 30.0 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.1 | 25.2 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 17.0 | GO:0005874 | microtubule(GO:0005874) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 27.2 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.3 | 22.3 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 1.3 | 18.1 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.1 | 15.0 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.6 | 14.6 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.3 | 14.0 | GO:0070001 | aspartic-type peptidase activity(GO:0070001) |
| 0.2 | 13.6 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.6 | 13.2 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.5 | 12.5 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.3 | 11.1 | GO:0016759 | cellulose synthase activity(GO:0016759) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 4.9 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.4 | 3.3 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.4 | 3.2 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.3 | 3.0 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.6 | 1.8 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.2 | 1.8 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.5 | 1.5 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.3 | 1.5 | PID ATM PATHWAY | ATM pathway |
| 0.5 | 1.4 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.3 | 1.3 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 4.5 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.9 | 2.6 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.3 | 2.6 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.1 | 2.6 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 0.3 | 2.2 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.6 | 1.8 | REACTOME EGFR DOWNREGULATION | Genes involved in EGFR downregulation |
| 0.4 | 1.8 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.2 | 1.7 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.3 | 1.5 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 0.5 | 1.4 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |