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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G22540
Z-value: 0.86
Transcription factors associated with AT2G22540
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G22540
|
AT2G22540 | K-box region and MADS-box transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SVP | arTal_v1_Chr2_+_9579647_9579647 | -0.54 | 3.3e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 1.89 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr5_+_625254_625254 Show fit | 1.36 |
AT5G02760.1
|
Protein phosphatase 2C family protein |
|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 1.36 |
AT1G74670.1
|
Gibberellin-regulated family protein |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 1.34 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 1.25 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 1.25 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 1.24 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 1.24 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 1.23 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr3_-_16448844_16448844 Show fit | 1.20 |
AT3G44990.1
|
xyloglucan endo-transglycosylase-related 8 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G22540
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 7.0 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.3 | 4.9 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 4.1 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.0 | 3.6 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.1 | 3.0 | GO:0010207 | photosystem II assembly(GO:0010207) |
| 0.1 | 2.7 | GO:0010166 | wax metabolic process(GO:0010166) |
| 0.1 | 2.7 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 2.5 | GO:0006284 | base-excision repair(GO:0006284) |
| 0.1 | 1.8 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.1 | 1.7 | GO:2000012 | regulation of auxin polar transport(GO:2000012) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 29.7 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 16.0 | GO:0009579 | thylakoid(GO:0009579) |
| 0.2 | 6.6 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 6.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 6.3 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.0 | 4.5 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 4.1 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.0 | 1.9 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.0 | 1.6 | GO:0005874 | microtubule(GO:0005874) |
| 0.4 | 1.3 | GO:0030093 | chloroplast photosystem I(GO:0030093) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 9.1 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 4.8 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.1 | 4.6 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.2 | 3.9 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.0 | 2.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 2.4 | GO:0080161 | auxin transmembrane transporter activity(GO:0080161) |
| 0.2 | 2.0 | GO:0003905 | alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733) |
| 0.3 | 1.9 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.2 | 1.9 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.1 | 1.7 | GO:0103075 | indole-3-pyruvate monooxygenase activity(GO:0103075) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 4.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 0.7 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.6 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.5 | PID ATM PATHWAY | ATM pathway |
| 0.0 | 0.5 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.1 | 0.4 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.0 | 0.4 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.3 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.1 | 0.3 | PID MYC PATHWAY | C-MYC pathway |
| 0.1 | 0.3 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 6.7 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 1.0 | REACTOME GPCR LIGAND BINDING | Genes involved in GPCR ligand binding |
| 0.2 | 0.6 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.0 | 0.6 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.2 | 0.5 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.2 | 0.5 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.0 | 0.4 | REACTOME ORC1 REMOVAL FROM CHROMATIN | Genes involved in Orc1 removal from chromatin |
| 0.1 | 0.3 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
| 0.0 | 0.3 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.0 | 0.3 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |