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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT2G22540

Z-value: 0.86

Transcription factors associated with AT2G22540

Gene Symbol Gene ID Gene Info
AT2G22540
AT2G22540 K-box region and MADS-box transcription factor family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
SVParTal_v1_Chr2_+_9579647_9579647-0.543.3e-03Click!

Activity profile of AT2G22540 motif

Sorted Z-values of AT2G22540 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_-_16950705 1.89 AT2G40610.1
EXPA8
expansin A8
Chr5_+_625254 1.36 AT5G02760.1
AT5G02760
Protein phosphatase 2C family protein
Chr1_+_28053030 1.36 AT1G74670.1
GASA6
Gibberellin-regulated family protein
Chr4_-_18098633 1.34 AT4G38770.1
PRP4
proline-rich protein 4
Chr3_-_197974 1.25 AT3G01500.1
CA1
carbonic anhydrase 1
Chr3_-_198160 1.25 AT3G01500.2
CA1
carbonic anhydrase 1
Chr5_-_9082384 1.24 AT5G26000.1
AT5G26000.2
TGG1
thioglucoside glucohydrolase 1
Chr3_-_198664 1.24 AT3G01500.3
CA1
carbonic anhydrase 1
Chr3_+_5556710 1.23 AT3G16370.1
AT3G16370
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_-_16448844 1.20 AT3G44990.1
XTH31
xyloglucan endo-transglycosylase-related 8
Chr3_-_197564 1.20 AT3G01500.4
CA1
carbonic anhydrase 1
Chr3_-_21523375 1.14 AT3G58120.2
AT3G58120.1
BZIP61
Basic-leucine zipper (bZIP) transcription factor family protein
Chr2_+_14577083 1.07 AT2G34620.1
AT2G34620
Mitochondrial transcription termination factor family protein
Chr4_+_2449434 1.01 AT4G04840.1
MSRB6
methionine sulfoxide reductase B6
Chr2_-_15474717 1.00 AT2G36870.2
AT2G36870.1
XTH32
xyloglucan endotransglucosylase/hydrolase 32
Chr1_-_59215 0.99 AT1G01120.1
KCS1
3-ketoacyl-CoA synthase 1
Chr1_+_10371675 0.96 AT1G29660.1
AT1G29660
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_+_23266227 0.90 AT3G62950.1
AT3G62950
Thioredoxin superfamily protein
Chr5_+_4757856 0.89 AT5G14740.3
AT5G14740.6
AT5G14740.1
AT5G14740.7
AT5G14740.8
AT5G14740.2
AT5G14740.4
AT5G14740.5
CA2
carbonic anhydrase 2
Chr5_+_17712203 0.88 AT5G44020.1
AT5G44020
HAD superfamily, subfamily IIIB acid phosphatase
Chr5_+_4758921 0.86 AT5G14740.9
CA2
carbonic anhydrase 2
Chr5_-_18026077 0.86 AT5G44680.1
AT5G44680
DNA glycosylase superfamily protein
Chr5_+_7502427 0.86 AT5G22580.1
AT5G22580
Stress responsive A/B Barrel Domain-containing protein
Chr3_+_20644843 0.85 AT3G55646.1
AT3G55646
TPRXL
Chr4_-_10391298 0.84 AT4G18970.1
AT4G18970
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_-_10390991 0.83 AT4G18970.2
AT4G18970
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_+_17949416 0.83 AT3G48460.1
AT3G48460
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_+_3644547 0.82 AT5G11420.1
AT5G11420
transmembrane protein, putative (Protein of unknown function, DUF642)
Chr2_+_14384797 0.81 AT2G34060.1
AT2G34060
Peroxidase superfamily protein
Chr1_+_20614573 0.80 AT1G55260.1
AT1G55260.2
AT1G55260
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_-_19648362 0.80 AT5G48490.1
AT5G48490
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_-_4265156 0.80 AT1G12500.1
AT1G12500
Nucleotide-sugar transporter family protein
Chr2_+_14733975 0.79 AT2G34925.1
CLE42
CLAVATA3/ESR-RELATED 42
Chr3_-_19541284 0.78 AT3G52720.4
AT3G52720.2
ACA1
alpha carbonic anhydrase 1
Chr4_-_14872267 0.78 AT4G30410.1
AT4G30410.2
AT4G30410
sequence-specific DNA binding transcription factor
Chr5_-_25898171 0.77 AT5G64770.1
RGF9
root meristem growth factor
Chr1_-_84864 0.77 AT1G01190.1
AT1G01190.2
CYP78A8
cytochrome P450, family 78, subfamily A, polypeptide 8
Chr3_-_19542160 0.77 AT3G52720.3
AT3G52720.1
ACA1
alpha carbonic anhydrase 1
Chr1_-_8183570 0.76 AT1G23080.2
AT1G23080.3
AT1G23080.4
AT1G23080.1
PIN7
Auxin efflux carrier family protein
Chr4_-_16583075 0.76 AT4G34760.1
AT4G34760
SAUR-like auxin-responsive protein family
Chr5_+_18634041 0.76 AT5G45950.1
AT5G45950
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr5_+_5237970 0.76 AT5G16030.1
AT5G16030.4
AT5G16030.2
AT5G16030.3
AT5G16030
mental retardation GTPase activating protein
Chr4_+_620691 0.75 AT4G01460.1
AT4G01460.2
AT4G01460
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr2_+_19243348 0.75 AT2G46820.1
AT2G46820.2
PSI-P
photosystem I P subunit
Chr2_-_15137012 0.74 AT2G36050.1
OFP15
ovate family protein 15
Chr5_-_24990331 0.74 AT5G62220.1
GT18
glycosyltransferase 18
Chr2_+_13647699 0.73 AT2G32100.1
OFP16
ovate family protein 16
Chr2_-_15790139 0.72 AT2G37640.1
EXP3
Barwin-like endoglucanases superfamily protein
Chr5_+_5238502 0.72 AT5G16030.5
AT5G16030
mental retardation GTPase activating protein
Chr5_-_4171954 0.72 AT5G13140.1
AT5G13140
Pollen Ole e 1 allergen and extensin family protein
Chr5_+_16768935 0.71 AT5G41900.1
AT5G41900
alpha/beta-Hydrolases superfamily protein
Chr1_-_19052582 0.71 AT1G51400.1
AT1G51400
Photosystem II 5 kD protein
Chr3_-_8623214 0.71 AT3G23880.1
AT3G23880
F-box and associated interaction domains-containing protein
Chr4_-_13398307 0.71 AT4G26540.1
AT4G26540
Leucine-rich repeat receptor-like protein kinase family protein
Chr1_-_15607966 0.71 AT1G41830.1
SKS6
SKU5-similar 6
Chr1_-_4530222 0.71 AT1G13250.1
GATL3
galacturonosyltransferase-like 3
Chr1_-_2560432 0.70 AT1G08160.1
AT1G08160
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr5_-_8916856 0.70 AT5G25610.1
RD22
BURP domain-containing protein
Chr2_-_15789605 0.69 AT2G37640.2
EXP3
Barwin-like endoglucanases superfamily protein
Chr5_+_15957368 0.69 AT5G39860.1
PRE1
basic helix-loop-helix (bHLH) DNA-binding family protein
Chr3_+_5358601 0.69 AT3G15850.1
FAD5
fatty acid desaturase 5
Chr5_+_25524045 0.68 AT5G63780.2
SHA1
RING/FYVE/PHD zinc finger superfamily protein
Chr1_+_17918207 0.67 AT1G48480.1
RKL1
receptor-like kinase 1
Chr5_+_25523827 0.67 AT5G63780.1
SHA1
RING/FYVE/PHD zinc finger superfamily protein
Chr2_+_19191247 0.67 AT2G46710.1
ROPGAP3
Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein
Chr4_+_14192569 0.67 AT4G28720.1
YUC8
Flavin-binding monooxygenase family protein
Chr3_-_19467455 0.67 AT3G52500.1
AT3G52500
Eukaryotic aspartyl protease family protein
Chr5_+_5078200 0.66 AT5G15600.1
AT5G15600.2
SP1L4
SPIRAL1-like4
Chr1_+_7696427 0.66 AT1G21910.1
DREB26
Integrase-type DNA-binding superfamily protein
Chr5_-_15385247 0.66 AT5G38430.2
AT5G38430.1
RBCS1B
Ribulose bisphosphate carboxylase (small chain) family protein
Chr5_-_6842946 0.66 AT5G20270.1
HHP1
heptahelical transmembrane protein1
Chr5_-_20712386 0.66 AT5G50915.4
AT5G50915.2
AT5G50915.1
AT5G50915.3
AT5G50915
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr2_+_12585856 0.65 AT2G29290.1
AT2G29290.2
AT2G29290
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_-_598657 0.65 AT1G02730.1
CSLD5
cellulose synthase-like D5
Chr5_-_3190321 0.65 AT5G10170.1
MIPS3
myo-inositol-1-phosphate synthase 3
Chr1_+_24503315 0.64 AT1G65870.1
AT1G65870
Disease resistance-responsive (dirigent-like protein) family protein
Chr5_-_990630 0.63 AT5G03760.1
ATCSLA09
Nucleotide-diphospho-sugar transferases superfamily protein
Chr3_+_8586359 0.62 AT3G23805.1
RALFL24
ralf-like 24
Chr1_+_5058583 0.62 AT1G14700.4
AT1G14700.1
AT1G14700.3
AT1G14700.2
PAP3
purple acid phosphatase 3
Chr3_-_4042075 0.62 AT3G12710.1
AT3G12710
DNA glycosylase superfamily protein
Chr3_+_2563803 0.62 AT3G08030.1
AT3G08030
DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
Chr3_+_17929581 0.62 AT3G48420.1
AT3G48420
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr3_+_2564153 0.62 AT3G08030.2
AT3G08030
DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642)
Chr3_+_19845097 0.61 AT3G53530.2
AT3G53530.1
NAKR3
Chloroplast-targeted copper chaperone protein
Chr1_-_25049424 0.61 AT1G67090.2
RBCS1A
ribulose bisphosphate carboxylase small chain 1A
Chr1_-_25049667 0.61 AT1G67090.1
RBCS1A
ribulose bisphosphate carboxylase small chain 1A
Chr5_+_26572265 0.61 AT5G66580.1
AT5G66580
hypothetical protein
Chr3_-_23261927 0.60 AT3G62930.1
AT3G62930
Thioredoxin superfamily protein
Chr5_+_4944816 0.60 AT5G15230.1
GASA4
GAST1 protein homolog 4
Chr5_-_9242854 0.60 AT5G26330.1
AT5G26330
Cupredoxin superfamily protein
Chr5_-_8175431 0.60 AT5G24150.2
AT5G24150.1
SQP1
FAD/NAD(P)-binding oxidoreductase family protein
Chr4_+_160643 0.60 AT4G00360.1
CYP86A2
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr1_+_907523 0.59 AT1G03630.1
AT1G03630.2
POR C
protochlorophyllide oxidoreductase C
Chr1_+_3664187 0.59 AT1G10960.1
FD1
ferredoxin 1
Chr3_+_19417372 0.59 AT3G52370.2
AT3G52370.1
FLA15
FASCICLIN-like arabinogalactan protein 15 precursor
Chr4_-_15429113 0.59 AT4G31890.2
AT4G31890.1
AT4G31890.3
AT4G31890
ARM repeat superfamily protein
Chr3_-_22984566 0.59 AT3G62070.1
AT3G62070
hypothetical protein
Chr5_+_22530007 0.58 AT5G55620.1
AT5G55620
hypothetical protein
Chr5_-_21092410 0.58 AT5G51890.1
AT5G51890
Peroxidase superfamily protein
Chr1_+_4899045 0.58 AT1G14345.1
AT1G14345
NAD(P)-linked oxidoreductase superfamily protein
Chr5_+_18945543 0.58 AT5G46690.2
AT5G46690.1
bHLH071
beta HLH protein 71
Chr2_-_16603059 0.58 AT2G39800.2
AT2G39800.4
AT2G39800.3
P5CS1
delta1-pyrroline-5-carboxylate synthase 1
Chr1_+_1231452 0.58 AT1G04520.1
PDLP2
plasmodesmata-located protein 2
Chr1_+_18802552 0.57 AT1G50732.1
AT1G50732
transmembrane protein
Chr3_-_20841695 0.57 AT3G56160.1
AT3G56160.3
AT3G56160.2
AT3G56160.4
AT3G56160
Sodium Bile acid symporter family
Chr5_-_25629615 0.57 AT5G64040.2
AT5G64040.1
PSAN
photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)
Chr3_-_2216483 0.57 AT3G07010.1
AT3G07010.2
AT3G07010
Pectin lyase-like superfamily protein
Chr5_+_21170048 0.57 AT5G52100.1
CRR1
Dihydrodipicolinate reductase, bacterial/plant
Chr1_+_11532199 0.57 AT1G32060.1
PRK
phosphoribulokinase
Chr5_+_17722402 0.57 AT5G44050.1
AT5G44050
MATE efflux family protein
Chr3_+_8194606 0.57 AT3G23050.1
AT3G23050.3
AT3G23050.2
IAA7
indole-3-acetic acid 7
Chr3_-_1643174 0.57 AT3G05640.2
AT3G05640.1
AT3G05640.3
AT3G05640
Protein phosphatase 2C family protein
Chr3_+_288741 0.57 AT3G01810.2
AT3G01810
EEIG1/EHBP1 protein amino-terminal domain protein
Chr2_-_16603319 0.57 AT2G39800.1
P5CS1
delta1-pyrroline-5-carboxylate synthase 1
Chr3_+_2712236 0.57 AT3G08920.1
AT3G08920
Rhodanese/Cell cycle control phosphatase superfamily protein
Chr5_+_4945062 0.56 AT5G15230.2
GASA4
GAST1 protein homolog 4
Chr3_+_6180621 0.56 AT3G18050.1
AT3G18050
GPI-anchored protein
Chr5_+_1952505 0.56 AT5G06390.1
FLA17
FASCICLIN-like arabinogalactan protein 17 precursor
Chr3_+_288538 0.56 AT3G01810.3
AT3G01810
EEIG1/EHBP1 protein amino-terminal domain protein
Chr4_+_14677661 0.56 AT4G30020.2
AT4G30020.3
AT4G30020
PA-domain containing subtilase family protein
Chr4_+_6408007 0.55 AT4G10340.1
LHCB5
light harvesting complex of photosystem II 5
Chr3_+_22282423 0.55 AT3G60290.1
AT3G60290
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr3_+_288158 0.55 AT3G01810.1
AT3G01810
EEIG1/EHBP1 protein amino-terminal domain protein
Chr1_-_6072129 0.55 AT1G17650.1
AT1G17650.2
GLYR2
glyoxylate reductase 2
Chr4_-_8350030 0.55 AT4G14550.4
IAA14
indole-3-acetic acid inducible 14
Chr4_-_16384468 0.55 AT4G34220.1
AT4G34220
Leucine-rich repeat protein kinase family protein
Chr5_-_19939797 0.55 AT5G49170.1
AT5G49170
hypothetical protein
Chr4_+_5550404 0.55 AT4G08685.1
SAH7
Pollen Ole e 1 allergen and extensin family protein
Chr3_+_8610979 0.54 AT3G23840.1
AT3G23840
HXXXD-type acyl-transferase family protein
Chr3_-_8589754 0.54 AT3G23810.1
SAHH2
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr3_+_10017321 0.54 AT3G27160.1
AT3G27160.2
GHS1
Ribosomal protein S21 family protein
Chr3_+_6032072 0.53 AT3G17640.1
AT3G17640
Leucine-rich repeat (LRR) family protein
Chr1_+_898480 0.53 AT1G03600.1
PSB27
photosystem II family protein
Chr1_+_23144385 0.53 AT1G62520.1
AT1G62520
sulfated surface-like glycoprotein
Chr1_-_30330944 0.53 AT1G80690.1
AT1G80690.2
AT1G80690
PPPDE putative thiol peptidase family protein
Chr4_+_17583992 0.53 AT4G37400.1
CYP81F3
cytochrome P450, family 81, subfamily F, polypeptide 3
Chr4_+_8360996 0.52 AT4G14560.1
IAA1
indole-3-acetic acid inducible
Chr1_-_6791919 0.52 AT1G19640.1
JMT
jasmonic acid carboxyl methyltransferase
Chr1_+_17065858 0.52 AT1G45130.2
BGAL5
beta-galactosidase 5
Chr5_+_20945676 0.52 AT5G51560.1
AT5G51560
Leucine-rich repeat protein kinase family protein
Chr4_-_8350263 0.52 AT4G14550.1
AT4G14550.2
AT4G14550.3
IAA14
indole-3-acetic acid inducible 14
Chr5_-_21068327 0.52 AT5G51820.1
PGM
phosphoglucomutase
Chr4_+_14678096 0.52 AT4G30020.4
AT4G30020
PA-domain containing subtilase family protein
Chr3_-_3108266 0.52 AT3G10080.1
AT3G10080.2
AT3G10080
RmlC-like cupins superfamily protein
Chr2_-_12965723 0.52 AT2G30424.2
AT2G30424.3
AT2G30424.1
TCL2
Homeodomain-like superfamily protein
Chr5_+_152446 0.51 AT5G01370.1
ACI1
ALC-interacting protein 1
Chr5_-_753657 0.51 AT5G03170.1
FLA11
FASCICLIN-like arabinogalactan-protein 11
Chr2_+_11550705 0.51 AT2G27060.1
AT2G27060.2
AT2G27060.3
AT2G27060
Leucine-rich repeat protein kinase family protein
Chr4_-_7353117 0.51 AT4G12420.1
AT4G12420.2
SKU5
Cupredoxin superfamily protein
Chr3_-_629845 0.51 AT3G02870.2
AT3G02870.3
AT3G02870.1
VTC4
Inositol monophosphatase family protein
Chr5_+_17148808 0.50 AT5G42760.2
AT5G42760.1
AT5G42760
Leucine carboxyl methyltransferase
Chr1_-_19101265 0.50 AT1G51500.1
ABCG12
ABC-2 type transporter family protein
Chr5_-_3728726 0.50 AT5G11590.1
TINY2
Integrase-type DNA-binding superfamily protein
Chr3_+_19412019 0.50 AT3G52360.1
AT3G52360
transmembrane protein
Chr1_+_17065111 0.50 AT1G45130.1
BGAL5
beta-galactosidase 5
Chr1_+_28829243 0.50 AT1G76800.1
AT1G76800
Vacuolar iron transporter (VIT) family protein
Chr5_+_208866 0.50 AT5G01530.1
LHCB4.1
light harvesting complex photosystem II
Chr4_+_14677141 0.50 AT4G30020.1
AT4G30020
PA-domain containing subtilase family protein
Chr1_-_11539896 0.50 AT1G32080.1
LrgB
membrane protein
Chr4_+_10651744 0.50 AT4G19530.1
AT4G19530.2
AT4G19530
disease resistance protein (TIR-NBS-LRR class) family
Chr3_-_7704958 0.50 AT3G21870.1
CYCP2%3B1
cyclin p2;1
Chr4_+_9906821 0.50 AT4G17810.1
AT4G17810.2
AT4G17810
C2H2 and C2HC zinc fingers superfamily protein
Chr1_+_5828915 0.50 AT1G17050.1
SPS2
solanesyl diphosphate synthase 2
Chr3_-_23319636 0.50 AT3G63110.1
IPT3
isopentenyltransferase 3
Chr4_-_11885533 0.50 AT4G22570.2
AT4G22570.1
APT3
adenine phosphoribosyl transferase 3
Chr1_+_9259750 0.50 AT1G26770.2
EXPA10
expansin A10
Chr2_-_13120199 0.49 AT2G30790.1
PSBP-2
photosystem II subunit P-2
Chr3_+_4510965 0.49 AT3G13750.1
BGAL1
beta galactosidase 1
Chr5_-_4299264 0.49 AT5G13400.1
AT5G13400
Major facilitator superfamily protein
Chr2_+_10667898 0.49 AT2G25080.1
GPX1
glutathione peroxidase 1
Chr5_+_19002564 0.49 AT5G46830.1
NIG1
calcium-binding transcription factor NIG1
Chr2_-_15490347 0.49 AT2G36895.2
AT2G36895.3
AT2G36895.1
AT2G36895
D-tagatose-1,6-bisphosphate aldolase subunit
Chr3_+_19930798 0.49 AT3G53800.1
AT3G53800.2
Fes1B
Fes1B
Chr1_+_27759941 0.48 AT1G73830.1
AT1G73830.2
BEE3
BR enhanced expression 3
Chr5_+_26261136 0.48 AT5G65683.1
WAVH2
Zinc finger (C3HC4-type RING finger) family protein
Chr1_-_2143977 0.48 AT1G06980.1
AT1G06980
6,7-dimethyl-8-ribityllumazine synthase
Chr3_-_4698141 0.48 AT3G14170.2
AT3G14170.1
AT3G14170
hypothetical protein (DUF936)
Chr5_-_4582856 0.48 AT5G14210.1
AT5G14210.2
AT5G14210.3
AT5G14210
Leucine-rich repeat protein kinase family protein
Chr4_+_8929031 0.48 AT4G15670.1
AT4G15670
Thioredoxin superfamily protein
Chr4_-_18068293 0.48 AT4G38660.1
AT4G38660
Pathogenesis-related thaumatin superfamily protein
Chr5_-_10933061 0.47 AT5G28910.2
AT5G28910.1
AT5G28910
alpha-(1,6)-fucosyltransferase
Chr3_-_8890927 0.47 AT3G24460.1
AT3G24460
Serinc-domain containing serine and sphingolipid biosynthesis protein
Chr5_+_18894378 0.47 AT5G46570.1
BSK2
BR-signaling kinase 2
Chr1_+_9259432 0.47 AT1G26770.1
EXPA10
expansin A10
Chr4_-_17355891 0.47 AT4G36850.3
AT4G36850.4
AT4G36850.2
AT4G36850.1
AT4G36850
PQ-loop repeat family protein / transmembrane family protein
Chr1_-_25649254 0.47 AT1G68400.1
AT1G68400
leucine-rich repeat transmembrane protein kinase family protein
Chr4_-_18067873 0.46 AT4G38660.2
AT4G38660
Pathogenesis-related thaumatin superfamily protein
Chr1_+_21241579 0.46 AT1G56670.1
AT1G56670.2
AT1G56670
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_-_8393467 0.46 AT3G23430.1
PHO1
phosphate 1
Chr3_+_16945230 0.46 AT3G46130.2
AT3G46130.1
MYB48
myb domain protein 48
Chr1_+_29703055 0.46 AT1G78970.3
AT1G78970.1
LUP1
lupeol synthase 1
Chr2_+_12254888 0.46 AT2G28605.1
AT2G28605
Photosystem II reaction center PsbP family protein
Chr1_+_11396402 0.46 AT1G31800.1
CYP97A3
cytochrome P450, family 97, subfamily A, polypeptide 3
Chr3_-_5271984 0.46 AT3G15570.1
AT3G15570
Phototropic-responsive NPH3 family protein
Chr3_+_18049571 0.46 AT3G48730.1
GSA2
glutamate-1-semialdehyde 2,1-aminomutase 2
Chr3_+_18514266 0.46 AT3G49940.1
LBD38
LOB domain-containing protein 38
Chr4_-_17181261 0.46 AT4G36360.2
BGAL3
beta-galactosidase 3
Chr4_-_17181466 0.46 AT4G36360.1
BGAL3
beta-galactosidase 3
Chr3_-_7796310 0.46 AT3G22120.1
AT3G22120.2
CWLP
cell wall-plasma membrane linker protein
Chr1_-_4217412 0.45 AT1G12380.1
AT1G12380
hypothetical protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G22540

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 7.0 GO:0015976 carbon utilization(GO:0015976)
0.3 4.9 GO:0006949 syncytium formation(GO:0006949)
0.2 0.7 GO:0048873 tissue homeostasis(GO:0001894) homeostasis of number of meristem cells(GO:0007639) homeostasis of number of cells(GO:0048872) homeostasis of number of cells within a tissue(GO:0048873)
0.2 0.2 GO:2000692 negative regulation of seed maturation(GO:2000692)
0.2 1.0 GO:0019742 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
0.2 0.8 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.2 0.4 GO:0042549 photosystem II stabilization(GO:0042549)
0.2 1.1 GO:0055129 L-proline biosynthetic process(GO:0055129)
0.2 0.6 GO:0006428 isoleucyl-tRNA aminoacylation(GO:0006428)
0.2 0.6 GO:0071158 regulation of cell cycle arrest(GO:0071156) positive regulation of cell cycle arrest(GO:0071158)
0.2 0.7 GO:0006065 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
0.2 0.9 GO:0035970 peptidyl-threonine dephosphorylation(GO:0035970)
0.2 0.5 GO:1900032 regulation of trichome patterning(GO:1900032) negative regulation of trichome patterning(GO:1900033)
0.2 1.2 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.2 0.5 GO:0080051 cutin transport(GO:0080051)
0.2 0.6 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.1 0.6 GO:0048462 carpel formation(GO:0048462)
0.1 0.5 GO:0080003 thalianol metabolic process(GO:0080003)
0.1 0.4 GO:0010541 acropetal auxin transport(GO:0010541)
0.1 1.0 GO:0010065 primary meristem tissue development(GO:0010065)
0.1 0.9 GO:1904278 regulation of wax biosynthetic process(GO:1904276) positive regulation of wax biosynthetic process(GO:1904278)
0.1 3.0 GO:0010207 photosystem II assembly(GO:0010207)
0.1 0.6 GO:0010086 embryonic root morphogenesis(GO:0010086)
0.1 0.5 GO:0048205 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.1 0.4 GO:0046506 sulfolipid metabolic process(GO:0046505) sulfolipid biosynthetic process(GO:0046506)
0.1 0.8 GO:0006021 inositol biosynthetic process(GO:0006021)
0.1 1.1 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.1 0.3 GO:0006059 hexitol metabolic process(GO:0006059) hexitol biosynthetic process(GO:0019406) mannitol biosynthetic process(GO:0019593) mannitol metabolic process(GO:0019594)
0.1 0.3 GO:1900386 positive regulation of flavonol biosynthetic process(GO:1900386)
0.1 1.0 GO:0010205 photoinhibition(GO:0010205) negative regulation of photosynthesis, light reaction(GO:0043155)
0.1 0.3 GO:0009915 phloem sucrose loading(GO:0009915)
0.1 0.3 GO:0043953 protein transport by the Tat complex(GO:0043953)
0.1 0.3 GO:0042407 cristae formation(GO:0042407)
0.1 0.4 GO:0015669 gas transport(GO:0015669)
0.1 1.6 GO:0046501 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.1 0.9 GO:0006168 adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096)
0.1 1.8 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.1 0.8 GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning(GO:0060774)
0.1 0.2 GO:0045827 negative regulation of isoprenoid metabolic process(GO:0045827)
0.1 0.5 GO:0010047 fruit dehiscence(GO:0010047)
0.1 0.4 GO:0016139 glycoside catabolic process(GO:0016139)
0.1 1.0 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
0.1 0.4 GO:0006741 NADP biosynthetic process(GO:0006741)
0.1 0.4 GO:0031297 replication fork processing(GO:0031297)
0.1 0.3 GO:0090392 sepal giant cell differentiation(GO:0090392)
0.1 0.3 GO:0051341 regulation of oxidoreductase activity(GO:0051341)
0.1 0.6 GO:1902326 positive regulation of chlorophyll biosynthetic process(GO:1902326)
0.1 0.3 GO:1905157 positive regulation of photosynthesis(GO:1905157)
0.1 0.3 GO:0042817 pyridoxal metabolic process(GO:0042817) pyridine-containing compound catabolic process(GO:0072526)
0.1 0.5 GO:0045038 protein import into chloroplast thylakoid membrane(GO:0045038)
0.1 0.6 GO:0034035 guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035)
0.1 0.3 GO:0007188 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger(GO:0007187) adenylate cyclase-modulating G-protein coupled receptor signaling pathway(GO:0007188)
0.1 0.4 GO:0009831 plant-type cell wall modification involved in multidimensional cell growth(GO:0009831)
0.1 0.4 GO:0015853 adenine transport(GO:0015853) guanine transport(GO:0015854)
0.1 0.7 GO:0051214 RNA virus induced gene silencing(GO:0051214)
0.1 0.4 GO:0048657 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.1 0.6 GO:0070981 cellular response to sucrose starvation(GO:0043617) L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982)
0.1 0.5 GO:0031022 nuclear migration along microfilament(GO:0031022)
0.1 0.2 GO:0048445 carpel morphogenesis(GO:0048445)
0.1 0.7 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.1 1.0 GO:0045723 positive regulation of fatty acid biosynthetic process(GO:0045723)
0.1 0.1 GO:0071281 cellular response to iron ion(GO:0071281)
0.1 0.6 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.1 2.7 GO:0010166 wax metabolic process(GO:0010166)
0.1 0.3 GO:0010480 microsporocyte differentiation(GO:0010480)
0.1 0.4 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.1 0.7 GO:0010424 DNA methylation on cytosine within a CG sequence(GO:0010424)
0.1 1.6 GO:2000033 regulation of seed dormancy process(GO:2000033)
0.1 2.5 GO:0006284 base-excision repair(GO:0006284)
0.1 0.4 GO:0009590 detection of gravity(GO:0009590)
0.1 0.2 GO:0045005 DNA-dependent DNA replication maintenance of fidelity(GO:0045005)
0.1 0.3 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.1 1.7 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.1 0.7 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.1 0.3 GO:1902448 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.1 0.7 GO:1902025 nitrate import(GO:1902025)
0.1 0.7 GO:0009942 longitudinal axis specification(GO:0009942)
0.1 0.4 GO:0046622 positive regulation of organ growth(GO:0046622)
0.1 0.2 GO:0010275 NAD(P)H dehydrogenase complex assembly(GO:0010275)
0.1 0.4 GO:0010390 histone monoubiquitination(GO:0010390)
0.1 1.2 GO:0010492 maintenance of shoot apical meristem identity(GO:0010492)
0.1 0.2 GO:0090227 regulation of red or far-red light signaling pathway(GO:0090227)
0.1 0.6 GO:0010206 photosystem II repair(GO:0010206)
0.1 0.2 GO:0048629 trichome patterning(GO:0048629)
0.1 0.1 GO:1903793 positive regulation of transporter activity(GO:0032411) positive regulation of ion transmembrane transporter activity(GO:0032414) positive regulation of anion channel activity(GO:1901529) positive regulation of anion transport(GO:1903793) positive regulation of anion transmembrane transport(GO:1903961)
0.1 0.2 GO:0001738 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.1 2.7 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.1 0.3 GO:0016120 carotene biosynthetic process(GO:0016120)
0.1 0.2 GO:0043132 NAD transport(GO:0043132)
0.1 1.3 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.1 0.5 GO:0009099 valine biosynthetic process(GO:0009099)
0.1 0.2 GO:0010254 nectary development(GO:0010254)
0.1 0.2 GO:0045876 positive regulation of sister chromatid cohesion(GO:0045876)
0.1 0.3 GO:0000023 maltose metabolic process(GO:0000023)
0.1 0.2 GO:0045857 regulation of molecular function, epigenetic(GO:0040030) negative regulation of molecular function, epigenetic(GO:0045857)
0.1 0.2 GO:0032409 regulation of transporter activity(GO:0032409)
0.1 0.2 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.1 0.3 GO:0006421 asparaginyl-tRNA aminoacylation(GO:0006421)
0.1 0.2 GO:0030638 polyketide metabolic process(GO:0030638)
0.1 0.3 GO:0009807 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.1 0.2 GO:0071258 cellular response to gravity(GO:0071258)
0.1 0.5 GO:0016045 detection of bacterium(GO:0016045)
0.1 4.1 GO:0007018 microtubule-based movement(GO:0007018)
0.1 0.4 GO:0010569 regulation of double-strand break repair via homologous recombination(GO:0010569)
0.1 0.2 GO:0006557 S-adenosylmethioninamine biosynthetic process(GO:0006557) S-adenosylmethioninamine metabolic process(GO:0046499)
0.1 0.2 GO:0071421 manganese ion transmembrane transport(GO:0071421)
0.1 0.2 GO:0032196 transposition(GO:0032196)
0.1 0.4 GO:0000244 spliceosomal tri-snRNP complex assembly(GO:0000244)
0.1 0.2 GO:0009584 detection of visible light(GO:0009584)
0.1 0.3 GO:0018206 peptidyl-methionine modification(GO:0018206)
0.1 0.1 GO:0010184 cytokinin transport(GO:0010184)
0.1 0.4 GO:0010236 plastoquinone biosynthetic process(GO:0010236)
0.1 0.4 GO:0015909 long-chain fatty acid transport(GO:0015909)
0.1 0.2 GO:0008645 hexose transport(GO:0008645) fructose transport(GO:0015755)
0.1 0.2 GO:0060145 viral gene silencing in virus induced gene silencing(GO:0060145)
0.1 0.2 GO:0099636 cytoplasmic streaming(GO:0099636)
0.1 0.3 GO:1904961 quiescent center organization(GO:1904961)
0.1 0.2 GO:0080094 response to trehalose-6-phosphate(GO:0080094)
0.1 0.4 GO:0010306 rhamnogalacturonan II biosynthetic process(GO:0010306) rhamnogalacturonan II metabolic process(GO:0010396)
0.1 0.7 GO:0019685 photosynthesis, dark reaction(GO:0019685)
0.1 0.3 GO:0009804 coumarin metabolic process(GO:0009804)
0.1 0.6 GO:0016559 peroxisome fission(GO:0016559)
0.1 0.3 GO:0000710 meiotic mismatch repair(GO:0000710)
0.1 0.4 GO:1901642 nucleoside transmembrane transport(GO:1901642)
0.1 0.5 GO:0051513 regulation of monopolar cell growth(GO:0051513)
0.1 0.7 GO:0048766 root hair initiation(GO:0048766)
0.1 0.2 GO:0016098 monoterpenoid metabolic process(GO:0016098) monoterpenoid biosynthetic process(GO:0016099)
0.0 0.1 GO:1901537 positive regulation of DNA demethylation(GO:1901537)
0.0 0.1 GO:0017145 stem cell division(GO:0017145)
0.0 0.4 GO:0006545 glycine biosynthetic process(GO:0006545)
0.0 0.1 GO:0048479 style development(GO:0048479)
0.0 0.2 GO:0032418 lysosome localization(GO:0032418)
0.0 0.5 GO:0036065 fucosylation(GO:0036065)
0.0 0.2 GO:0000085 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.0 0.6 GO:0006857 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.0 1.1 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.0 0.7 GO:0006535 cysteine biosynthetic process from serine(GO:0006535)
0.0 1.6 GO:0006730 one-carbon metabolic process(GO:0006730)
0.0 0.3 GO:0043100 pyrimidine nucleobase salvage(GO:0043100)
0.0 0.2 GO:0010495 long-distance posttranscriptional gene silencing(GO:0010495)
0.0 0.2 GO:0045682 regulation of epithelial cell differentiation(GO:0030856) regulation of epidermal cell differentiation(GO:0045604) regulation of epidermis development(GO:0045682)
0.0 0.6 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.0 0.1 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.0 0.1 GO:0009143 nucleoside triphosphate catabolic process(GO:0009143)
0.0 0.3 GO:0097502 mannosylation(GO:0097502)
0.0 0.1 GO:0034982 mitochondrial protein processing(GO:0034982)
0.0 0.9 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
0.0 0.1 GO:1900459 positive regulation of brassinosteroid mediated signaling pathway(GO:1900459)
0.0 0.1 GO:0036115 fatty-acyl-CoA catabolic process(GO:0036115) malonyl-CoA catabolic process(GO:2001294)
0.0 0.1 GO:0042660 positive regulation of trichoblast fate specification(GO:0010063) positive regulation of cell fate specification(GO:0042660) positive regulation of plant epidermal cell differentiation(GO:1903890)
0.0 1.0 GO:1905177 tracheary element differentiation(GO:1905177)
0.0 0.2 GO:0060631 regulation of meiosis I(GO:0060631)
0.0 0.1 GO:0044380 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.0 0.8 GO:0046885 regulation of hormone biosynthetic process(GO:0046885)
0.0 0.5 GO:2000896 amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896)
0.0 0.2 GO:0001887 selenium compound metabolic process(GO:0001887)
0.0 0.2 GO:0046475 glycerophospholipid catabolic process(GO:0046475)
0.0 0.2 GO:0007043 cell-cell junction assembly(GO:0007043)
0.0 1.1 GO:0048598 embryonic morphogenesis(GO:0048598)
0.0 0.1 GO:0033194 response to hydroperoxide(GO:0033194)
0.0 0.2 GO:0046621 negative regulation of organ growth(GO:0046621)
0.0 0.3 GO:0072337 modified amino acid transport(GO:0072337)
0.0 0.3 GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement(GO:1901527)
0.0 0.4 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.0 0.4 GO:0007050 cell cycle arrest(GO:0007050)
0.0 1.0 GO:0045168 cell-cell signaling involved in cell fate commitment(GO:0045168)
0.0 3.6 GO:0015979 photosynthesis(GO:0015979)
0.0 0.3 GO:0080151 positive regulation of salicylic acid mediated signaling pathway(GO:0080151)
0.0 0.2 GO:0001113 DNA-templated transcriptional open complex formation(GO:0001112) transcriptional open complex formation at RNA polymerase II promoter(GO:0001113) protein-DNA complex remodeling(GO:0001120) macromolecular complex remodeling(GO:0034367)
0.0 0.2 GO:0005980 glycogen catabolic process(GO:0005980)
0.0 0.5 GO:0015918 sterol transport(GO:0015918)
0.0 0.2 GO:2001293 malonyl-CoA metabolic process(GO:2001293) malonyl-CoA biosynthetic process(GO:2001295)
0.0 0.1 GO:0010455 positive regulation of cell fate commitment(GO:0010455)
0.0 0.1 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.0 0.1 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.0 0.1 GO:0071163 DNA replication preinitiation complex assembly(GO:0071163)
0.0 0.1 GO:0031929 TOR signaling(GO:0031929)
0.0 0.1 GO:0001672 regulation of chromatin assembly or disassembly(GO:0001672)
0.0 0.1 GO:0046482 para-aminobenzoic acid metabolic process(GO:0046482)
0.0 0.4 GO:0010052 guard cell differentiation(GO:0010052)
0.0 0.2 GO:0034227 tRNA thio-modification(GO:0034227)
0.0 0.2 GO:0071486 cellular response to high light intensity(GO:0071486)
0.0 0.1 GO:0019695 choline metabolic process(GO:0019695)
0.0 1.2 GO:0043622 cortical microtubule organization(GO:0043622)
0.0 0.1 GO:0046416 D-amino acid metabolic process(GO:0046416)
0.0 0.4 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.0 0.2 GO:1900425 negative regulation of defense response to bacterium(GO:1900425)
0.0 0.1 GO:0033567 DNA replication, Okazaki fragment processing(GO:0033567)
0.0 1.0 GO:0007267 cell-cell signaling(GO:0007267)
0.0 0.5 GO:0005983 starch catabolic process(GO:0005983)
0.0 0.2 GO:0006022 aminoglycan metabolic process(GO:0006022)
0.0 0.1 GO:0051316 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation(GO:0051316) attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation(GO:0051455) microtubule cytoskeleton organization involved in homologous chromosome segregation(GO:0090172)
0.0 0.3 GO:0010199 organ boundary specification between lateral organs and the meristem(GO:0010199)
0.0 0.1 GO:0031507 heterochromatin assembly(GO:0031507)
0.0 0.3 GO:0009799 specification of symmetry(GO:0009799)
0.0 0.3 GO:0043489 RNA stabilization(GO:0043489)
0.0 0.4 GO:0051784 negative regulation of mitotic nuclear division(GO:0045839) negative regulation of nuclear division(GO:0051784)
0.0 0.1 GO:1900370 positive regulation of posttranscriptional gene silencing(GO:0060148) positive regulation of RNA interference(GO:1900370)
0.0 0.2 GO:0010076 maintenance of floral meristem identity(GO:0010076)
0.0 0.2 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.0 0.2 GO:0009435 NAD biosynthetic process(GO:0009435)
0.0 0.7 GO:0080092 regulation of pollen tube growth(GO:0080092)
0.0 0.1 GO:0002943 tRNA dihydrouridine synthesis(GO:0002943)
0.0 0.4 GO:0007143 female meiotic division(GO:0007143)
0.0 0.6 GO:0010227 floral organ abscission(GO:0010227)
0.0 0.0 GO:0080119 ER body organization(GO:0080119)
0.0 0.2 GO:0090057 root radial pattern formation(GO:0090057)
0.0 0.4 GO:0010158 abaxial cell fate specification(GO:0010158)
0.0 0.1 GO:0001560 regulation of cell growth by extracellular stimulus(GO:0001560)
0.0 0.6 GO:0010152 pollen maturation(GO:0010152)
0.0 0.1 GO:0010235 guard mother cell cytokinesis(GO:0010235)
0.0 0.3 GO:0010103 stomatal complex morphogenesis(GO:0010103)
0.0 0.3 GO:0080086 stamen filament development(GO:0080086)
0.0 0.1 GO:0035017 cuticle pattern formation(GO:0035017)
0.0 0.2 GO:1904668 positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.0 0.4 GO:0007009 plasma membrane organization(GO:0007009)
0.0 0.2 GO:0080028 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.0 0.3 GO:0046466 membrane lipid catabolic process(GO:0046466)
0.0 0.2 GO:0071588 hydrogen peroxide mediated signaling pathway(GO:0071588)
0.0 0.2 GO:0052126 movement in host(GO:0044000) transport of virus in multicellular host(GO:0046739) movement in other organism involved in symbiotic interaction(GO:0051814) movement in host environment(GO:0052126) movement in environment of other organism involved in symbiotic interaction(GO:0052192)
0.0 0.6 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.0 0.4 GO:0010584 pollen exine formation(GO:0010584)
0.0 0.3 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.0 0.6 GO:0071577 zinc II ion transmembrane transport(GO:0071577)
0.0 0.2 GO:0019408 dolichol biosynthetic process(GO:0019408)
0.0 0.2 GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299)
0.0 0.3 GO:0000712 resolution of meiotic recombination intermediates(GO:0000712)
0.0 0.1 GO:0006013 mannose metabolic process(GO:0006013)
0.0 0.1 GO:0046373 L-arabinose metabolic process(GO:0046373)
0.0 0.6 GO:0010582 floral meristem determinacy(GO:0010582)
0.0 0.3 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.0 0.2 GO:0080110 sporopollenin biosynthetic process(GO:0080110)
0.0 0.9 GO:0019762 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.0 0.2 GO:0010232 vascular transport(GO:0010232) phloem transport(GO:0010233)
0.0 0.1 GO:0010731 protein glutathionylation(GO:0010731)
0.0 0.1 GO:0046459 short-chain fatty acid metabolic process(GO:0046459)
0.0 0.1 GO:0000727 double-strand break repair via break-induced replication(GO:0000727)
0.0 0.1 GO:1901332 negative regulation of lateral root development(GO:1901332)
0.0 0.5 GO:2000652 regulation of secondary cell wall biogenesis(GO:2000652)
0.0 0.3 GO:0046653 tetrahydrofolate metabolic process(GO:0046653)
0.0 0.2 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.0 0.3 GO:0009299 mRNA transcription(GO:0009299)
0.0 0.2 GO:0032204 regulation of telomere maintenance(GO:0032204)
0.0 0.2 GO:0051984 positive regulation of chromosome segregation(GO:0051984)
0.0 0.2 GO:0032351 negative regulation of hormone metabolic process(GO:0032351) negative regulation of auxin metabolic process(GO:0090356)
0.0 0.3 GO:0006526 arginine biosynthetic process(GO:0006526)
0.0 0.3 GO:0032544 plastid translation(GO:0032544)
0.0 0.7 GO:0016126 sterol biosynthetic process(GO:0016126)
0.0 0.3 GO:0048829 root cap development(GO:0048829)
0.0 0.2 GO:0071249 cellular response to nitrate(GO:0071249)
0.0 0.2 GO:0007076 mitotic chromosome condensation(GO:0007076)
0.0 0.2 GO:0015749 monosaccharide transport(GO:0015749)
0.0 0.7 GO:0019750 chloroplast localization(GO:0019750) plastid localization(GO:0051644)
0.0 0.2 GO:0001709 cell fate determination(GO:0001709)
0.0 1.0 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.0 0.1 GO:0007266 Rho protein signal transduction(GO:0007266)
0.0 0.1 GO:0045492 xylan biosynthetic process(GO:0045492)
0.0 0.4 GO:0006814 sodium ion transport(GO:0006814)
0.0 0.1 GO:0043693 monoterpene biosynthetic process(GO:0043693)
0.0 0.3 GO:0010215 cellulose microfibril organization(GO:0010215)
0.0 0.2 GO:0009854 oxidative photosynthetic carbon pathway(GO:0009854)
0.0 0.1 GO:0048578 positive regulation of long-day photoperiodism, flowering(GO:0048578)
0.0 0.1 GO:0090646 mitochondrial tRNA processing(GO:0090646)
0.0 0.2 GO:0016117 tetraterpenoid biosynthetic process(GO:0016109) carotenoid biosynthetic process(GO:0016117)
0.0 0.1 GO:0051293 establishment of mitotic spindle orientation(GO:0000132) establishment of mitotic spindle localization(GO:0040001) establishment of spindle localization(GO:0051293) establishment of spindle orientation(GO:0051294) spindle localization(GO:0051653)
0.0 0.3 GO:0006268 DNA unwinding involved in DNA replication(GO:0006268)
0.0 0.0 GO:0040023 nuclear migration(GO:0007097) establishment of nucleus localization(GO:0040023) nucleus localization(GO:0051647)
0.0 0.1 GO:0071490 far-red light signaling pathway(GO:0010018) cellular response to far red light(GO:0071490)
0.0 0.1 GO:0010230 alternative respiration(GO:0010230)
0.0 0.2 GO:0006384 transcription initiation from RNA polymerase III promoter(GO:0006384)
0.0 0.3 GO:0042593 glucose homeostasis(GO:0042593)
0.0 0.1 GO:1902916 regulation of protein polyubiquitination(GO:1902914) positive regulation of protein polyubiquitination(GO:1902916)
0.0 0.2 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.0 0.4 GO:0007264 small GTPase mediated signal transduction(GO:0007264)
0.0 0.1 GO:0009090 homoserine biosynthetic process(GO:0009090)
0.0 0.1 GO:0051571 positive regulation of histone H3-K4 methylation(GO:0051571)
0.0 0.1 GO:0006446 regulation of translational initiation(GO:0006446)
0.0 0.2 GO:0036297 interstrand cross-link repair(GO:0036297)
0.0 0.1 GO:0000963 mitochondrial RNA processing(GO:0000963)
0.0 0.2 GO:0006547 histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803)
0.0 0.1 GO:0046209 nitric oxide metabolic process(GO:0046209)
0.0 0.1 GO:0031468 nuclear envelope reassembly(GO:0031468)
0.0 0.4 GO:0070816 phosphorylation of RNA polymerase II C-terminal domain(GO:0070816)
0.0 0.2 GO:0006833 water transport(GO:0006833) fluid transport(GO:0042044)
0.0 0.1 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.0 0.3 GO:0009959 negative gravitropism(GO:0009959)
0.0 0.1 GO:0046471 phosphatidylglycerol biosynthetic process(GO:0006655) phosphatidylglycerol metabolic process(GO:0046471)
0.0 0.0 GO:0071481 cellular response to X-ray(GO:0071481)
0.0 0.1 GO:0080009 mRNA methylation(GO:0080009)
0.0 0.2 GO:0000373 Group II intron splicing(GO:0000373)
0.0 0.2 GO:1904029 regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0000079) regulation of cyclin-dependent protein kinase activity(GO:1904029)
0.0 0.1 GO:0006303 double-strand break repair via nonhomologous end joining(GO:0006303)
0.0 0.1 GO:0009819 drought recovery(GO:0009819)
0.0 1.2 GO:0045490 pectin catabolic process(GO:0045490)
0.0 0.7 GO:0009630 gravitropism(GO:0009630)
0.0 0.1 GO:0097577 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.0 0.2 GO:0009688 abscisic acid biosynthetic process(GO:0009688) apocarotenoid biosynthetic process(GO:0043289) tertiary alcohol biosynthetic process(GO:1902645)
0.0 0.0 GO:0010198 synergid death(GO:0010198)
0.0 0.2 GO:1900865 chloroplast RNA modification(GO:1900865)
0.0 0.1 GO:0010196 nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066)
0.0 0.0 GO:0042989 sequestering of actin monomers(GO:0042989)
0.0 0.1 GO:0006829 zinc II ion transport(GO:0006829)
0.0 0.1 GO:0016104 triterpenoid biosynthetic process(GO:0016104)
0.0 0.1 GO:0042391 regulation of membrane potential(GO:0042391)
0.0 0.1 GO:0010264 myo-inositol hexakisphosphate biosynthetic process(GO:0010264) myo-inositol hexakisphosphate metabolic process(GO:0033517)
0.0 0.0 GO:0010597 green leaf volatile biosynthetic process(GO:0010597)
0.0 0.5 GO:0010101 post-embryonic root morphogenesis(GO:0010101) lateral root morphogenesis(GO:0010102)
0.0 0.1 GO:0016925 protein sumoylation(GO:0016925)
0.0 0.1 GO:0009750 response to fructose(GO:0009750)
0.0 0.0 GO:0010325 raffinose family oligosaccharide biosynthetic process(GO:0010325)
0.0 0.1 GO:0031408 oxylipin metabolic process(GO:0031407) oxylipin biosynthetic process(GO:0031408)
0.0 0.1 GO:0010540 basipetal auxin transport(GO:0010540)
0.0 0.1 GO:0036260 7-methylguanosine RNA capping(GO:0009452) RNA capping(GO:0036260)
0.0 0.1 GO:0048497 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.0 0.1 GO:0090116 C-5 methylation of cytosine(GO:0090116)
0.0 0.2 GO:0010020 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.0 0.1 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.0 0.1 GO:0009113 purine nucleobase biosynthetic process(GO:0009113)
0.0 0.1 GO:0060429 epithelium development(GO:0060429)
0.0 0.1 GO:0030488 tRNA methylation(GO:0030488)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.3 GO:0030093 chloroplast photosystem I(GO:0030093)
0.3 0.3 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.3 0.3 GO:0016328 lateral plasma membrane(GO:0016328)
0.2 6.6 GO:0010319 stromule(GO:0010319)
0.1 0.4 GO:0043674 pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674)
0.1 0.3 GO:0033281 TAT protein transport complex(GO:0033281)
0.1 0.9 GO:0009533 chloroplast stromal thylakoid(GO:0009533)
0.1 0.7 GO:0043073 germ cell nucleus(GO:0043073)
0.1 0.5 GO:0009897 external side of plasma membrane(GO:0009897)
0.1 0.4 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.1 0.2 GO:0000311 plastid large ribosomal subunit(GO:0000311)
0.1 0.2 GO:1990298 bub1-bub3 complex(GO:1990298)
0.1 1.3 GO:0009531 secondary cell wall(GO:0009531)
0.1 0.2 GO:0045178 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.1 0.6 GO:0070531 BRCA1-A complex(GO:0070531)
0.1 0.3 GO:0009509 chromoplast(GO:0009509)
0.1 4.1 GO:0031977 thylakoid lumen(GO:0031977)
0.1 0.1 GO:0043235 receptor complex(GO:0043235)
0.1 0.9 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.1 0.2 GO:0043240 Fanconi anaemia nuclear complex(GO:0043240)
0.1 0.5 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.1 0.8 GO:0005720 nuclear heterochromatin(GO:0005720)
0.1 0.3 GO:0071818 BAT3 complex(GO:0071818)
0.0 0.1 GO:0044614 nuclear pore cytoplasmic filaments(GO:0044614)
0.0 1.9 GO:0009706 chloroplast inner membrane(GO:0009706)
0.0 0.1 GO:0033597 mitotic checkpoint complex(GO:0033597)
0.0 0.4 GO:0009538 photosystem I reaction center(GO:0009538)
0.0 0.3 GO:0071339 MLL1/2 complex(GO:0044665) MLL1 complex(GO:0071339)
0.0 1.0 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.0 0.5 GO:0045298 tubulin complex(GO:0045298)
0.0 16.0 GO:0009579 thylakoid(GO:0009579)
0.0 0.4 GO:0031209 SCAR complex(GO:0031209)
0.0 1.0 GO:0005871 kinesin complex(GO:0005871)
0.0 0.2 GO:0034426 etioplast envelope(GO:0034425) etioplast membrane(GO:0034426)
0.0 0.2 GO:0044420 extracellular matrix component(GO:0044420) pollen coat(GO:0070505)
0.0 0.2 GO:0010330 cellulose synthase complex(GO:0010330)
0.0 0.3 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.0 0.2 GO:0051233 spindle midzone(GO:0051233)
0.0 0.5 GO:0009508 plastid chromosome(GO:0009508)
0.0 6.3 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.8 GO:0016324 apical plasma membrane(GO:0016324)
0.0 0.2 GO:0031907 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.0 0.2 GO:0031083 BLOC complex(GO:0031082) BLOC-1 complex(GO:0031083)
0.0 0.1 GO:0002178 palmitoyltransferase complex(GO:0002178) serine C-palmitoyltransferase complex(GO:0017059) endoplasmic reticulum palmitoyltransferase complex(GO:0031211)
0.0 0.1 GO:0031314 extrinsic component of mitochondrial inner membrane(GO:0031314)
0.0 0.2 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
0.0 0.2 GO:0031380 RNA-directed RNA polymerase complex(GO:0031379) nuclear RNA-directed RNA polymerase complex(GO:0031380)
0.0 0.2 GO:0005673 transcription factor TFIIE complex(GO:0005673)
0.0 0.2 GO:0032541 cortical endoplasmic reticulum(GO:0032541)
0.0 1.3 GO:0005811 lipid particle(GO:0005811)
0.0 0.2 GO:0005664 origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.0 0.1 GO:0010369 chromocenter(GO:0010369)
0.0 0.1 GO:0098553 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.0 1.6 GO:0005874 microtubule(GO:0005874)
0.0 4.5 GO:0048046 apoplast(GO:0048046)
0.0 0.0 GO:0009569 chloroplast starch grain(GO:0009569) starch grain(GO:0043036)
0.0 0.1 GO:0000796 condensin complex(GO:0000796)
0.0 0.2 GO:0045283 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)(GO:0005749) succinate dehydrogenase complex (ubiquinone)(GO:0045257) fumarate reductase complex(GO:0045283)
0.0 0.1 GO:0072686 mitotic spindle(GO:0072686)
0.0 6.3 GO:0009532 plastid stroma(GO:0009532)
0.0 0.2 GO:0031231 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.0 0.6 GO:0090406 pollen tube(GO:0090406)
0.0 0.1 GO:0009360 DNA polymerase III complex(GO:0009360)
0.0 29.7 GO:0005576 extracellular region(GO:0005576)
0.0 0.2 GO:0000418 DNA-directed RNA polymerase IV complex(GO:0000418)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.9 GO:0016984 ribulose-bisphosphate carboxylase activity(GO:0016984)
0.3 1.1 GO:0004349 glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350)
0.3 9.1 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.2 0.7 GO:0015026 coreceptor activity(GO:0015026)
0.2 1.9 GO:0033946 xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
0.2 0.7 GO:0010291 carotene beta-ring hydroxylase activity(GO:0010291)
0.2 0.8 GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158)
0.2 0.6 GO:0016630 protochlorophyllide reductase activity(GO:0016630)
0.2 0.6 GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase(GO:0008839)
0.2 0.6 GO:0004822 isoleucine-tRNA ligase activity(GO:0004822)
0.2 2.0 GO:0003905 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.2 0.5 GO:0045485 omega-6 fatty acid desaturase activity(GO:0045485)
0.2 0.6 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.2 3.9 GO:0004565 beta-galactosidase activity(GO:0004565)
0.2 1.4 GO:0009922 fatty acid elongase activity(GO:0009922)
0.1 0.6 GO:0070330 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.1 0.6 GO:0009784 transmembrane receptor histidine kinase activity(GO:0009784) transmembrane histidine kinase cytokinin receptor activity(GO:0009885)
0.1 1.7 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.1 0.3 GO:0070402 NADPH binding(GO:0070402)
0.1 0.7 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.1 1.1 GO:0008083 growth factor activity(GO:0008083)
0.1 1.1 GO:0000996 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.1 2.4 GO:0080161 auxin transmembrane transporter activity(GO:0080161)
0.1 0.5 GO:0015245 fatty acid transporter activity(GO:0015245)
0.1 1.0 GO:0042299 lupeol synthase activity(GO:0042299)
0.1 1.2 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.1 0.5 GO:0052834 inositol monophosphate 1-phosphatase activity(GO:0008934) inositol monophosphate phosphatase activity(GO:0052834)
0.1 0.5 GO:0052924 trans-octaprenyltranstransferase activity(GO:0050347) all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity(GO:0052924)
0.1 0.4 GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity(GO:0016767)
0.1 0.6 GO:0010277 chlorophyllide a oxygenase [overall] activity(GO:0010277)
0.1 0.4 GO:0004563 beta-N-acetylhexosaminidase activity(GO:0004563)
0.1 0.9 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.1 0.5 GO:0052739 phosphatidylserine 1-acylhydrolase activity(GO:0052739) 1-acyl-2-lysophosphatidylserine acylhydrolase activity(GO:0052740)
0.1 0.7 GO:0050017 L-3-cyanoalanine synthase activity(GO:0050017)
0.1 0.6 GO:0030267 glyoxylate reductase (NADP) activity(GO:0030267)
0.1 0.9 GO:0019137 thioglucosidase activity(GO:0019137)
0.1 0.5 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.1 0.4 GO:0080118 brassinosteroid sulfotransferase activity(GO:0080118)
0.1 0.5 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.1 0.8 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.1 0.3 GO:0080132 fatty acid alpha-hydroxylase activity(GO:0080132)
0.1 0.6 GO:0008728 GTP diphosphokinase activity(GO:0008728)
0.1 0.3 GO:0008330 protein tyrosine/threonine phosphatase activity(GO:0008330)
0.1 0.4 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.1 0.6 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.1 0.3 GO:0010297 4-alpha-glucanotransferase activity(GO:0004134) heteropolysaccharide binding(GO:0010297)
0.1 0.4 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.1 0.3 GO:0004817 cysteine-tRNA ligase activity(GO:0004817)
0.1 0.4 GO:0005366 myo-inositol:proton symporter activity(GO:0005366)
0.1 0.3 GO:0004831 tyrosine-tRNA ligase activity(GO:0004831)
0.1 1.0 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
0.1 0.3 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.1 0.6 GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066)
0.1 0.4 GO:0043682 copper-transporting ATPase activity(GO:0043682)
0.1 0.3 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.1 0.2 GO:0045430 chalcone isomerase activity(GO:0045430)
0.1 0.3 GO:0004556 alpha-amylase activity(GO:0004556)
0.1 0.2 GO:0000225 N-acetylglucosaminylphosphatidylinositol deacetylase activity(GO:0000225)
0.1 0.9 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.1 0.6 GO:0033201 starch synthase activity(GO:0009011) alpha-1,4-glucan synthase activity(GO:0033201)
0.1 0.2 GO:0009924 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.1 0.2 GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity(GO:0004742) S-acetyltransferase activity(GO:0016418)
0.1 0.5 GO:0016872 intramolecular lyase activity(GO:0016872)
0.1 0.2 GO:1990404 protein ADP-ribosylase activity(GO:1990404)
0.1 0.4 GO:0048365 Rac GTPase binding(GO:0048365)
0.1 0.6 GO:0010428 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)
0.1 0.3 GO:0004640 phosphoribosylanthranilate isomerase activity(GO:0004640)
0.1 0.2 GO:0019789 SUMO transferase activity(GO:0019789)
0.1 0.4 GO:0051723 protein methylesterase activity(GO:0051723)
0.1 1.4 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.1 0.4 GO:0045431 flavonol synthase activity(GO:0045431)
0.1 0.2 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
0.1 0.3 GO:0046593 mandelonitrile lyase activity(GO:0046593)
0.1 0.4 GO:0030332 cyclin binding(GO:0030332)
0.1 0.3 GO:0004816 asparagine-tRNA ligase activity(GO:0004816)
0.1 0.4 GO:0031177 phosphopantetheine binding(GO:0031177)
0.1 4.6 GO:0003777 microtubule motor activity(GO:0003777)
0.1 0.8 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.1 0.2 GO:0000234 phosphoethanolamine N-methyltransferase activity(GO:0000234)
0.1 0.2 GO:0004014 adenosylmethionine decarboxylase activity(GO:0004014)
0.1 0.3 GO:0008430 selenium binding(GO:0008430)
0.1 0.2 GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity(GO:0004729) protoporphyrinogen oxidase activity(GO:0070818)
0.1 0.5 GO:0009378 four-way junction helicase activity(GO:0009378)
0.1 1.1 GO:0000822 inositol hexakisphosphate binding(GO:0000822)
0.1 0.4 GO:0052623 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.1 0.5 GO:1904680 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.1 0.2 GO:0051669 levanase activity(GO:0031219) fructan beta-fructosidase activity(GO:0051669)
0.1 0.4 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.1 0.2 GO:0080106 3-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080102) 5-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080104) 7-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080106)
0.1 1.3 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.1 0.3 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.1 1.3 GO:0016168 chlorophyll binding(GO:0016168)
0.1 0.2 GO:0036310 annealing helicase activity(GO:0036310)
0.1 1.7 GO:0005179 hormone activity(GO:0005179)
0.0 0.1 GO:0004452 isopentenyl-diphosphate delta-isomerase activity(GO:0004452)
0.0 0.4 GO:0051185 S-adenosyl-L-methionine transmembrane transporter activity(GO:0000095) coenzyme transporter activity(GO:0051185)
0.0 0.2 GO:0004075 biotin carboxylase activity(GO:0004075)
0.0 0.8 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.0 0.1 GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity(GO:0004042)
0.0 0.3 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.0 1.0 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.4 GO:0043495 protein anchor(GO:0043495)
0.0 0.2 GO:0002151 G-quadruplex RNA binding(GO:0002151)
0.0 0.2 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.0 0.2 GO:0008253 5'-nucleotidase activity(GO:0008253)
0.0 0.3 GO:0004312 fatty acid synthase activity(GO:0004312)
0.0 0.3 GO:0004645 phosphorylase activity(GO:0004645)
0.0 0.1 GO:0003986 acetyl-CoA hydrolase activity(GO:0003986)
0.0 0.5 GO:0016160 amylase activity(GO:0016160) beta-amylase activity(GO:0016161)
0.0 0.2 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.0 0.1 GO:0008936 nicotinamidase activity(GO:0008936)
0.0 0.2 GO:0004001 adenosine kinase activity(GO:0004001)
0.0 0.1 GO:0051777 ent-kaurenoate oxidase activity(GO:0051777)
0.0 0.1 GO:0015292 uniporter activity(GO:0015292)
0.0 0.7 GO:0102336 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.0 0.2 GO:0004400 histidinol-phosphate transaminase activity(GO:0004400)
0.0 0.2 GO:0000048 peptidyltransferase activity(GO:0000048) glutathione hydrolase activity(GO:0036374)
0.0 0.1 GO:0004347 glucose-6-phosphate isomerase activity(GO:0004347)
0.0 0.4 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.0 0.0 GO:0004373 glycogen (starch) synthase activity(GO:0004373)
0.0 0.5 GO:0042300 beta-amyrin synthase activity(GO:0042300)
0.0 0.2 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.0 0.2 GO:0052656 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.0 0.2 GO:0016768 spermine synthase activity(GO:0016768)
0.0 0.1 GO:0016040 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
0.0 0.1 GO:0070259 tyrosyl-DNA phosphodiesterase activity(GO:0070259)
0.0 0.1 GO:0080002 indole-3-acetate beta-glucosyltransferase activity(GO:0047215) UDP-glucose:4-aminobenzoate acylglucosyltransferase activity(GO:0080002)
0.0 0.3 GO:0004003 ATP-dependent DNA helicase activity(GO:0004003) ATP-dependent helicase activity(GO:0008026) single-stranded DNA-dependent ATP-dependent DNA helicase activity(GO:0017116) single-stranded DNA-dependent ATPase activity(GO:0043142) purine NTP-dependent helicase activity(GO:0070035)
0.0 0.1 GO:0004647 phosphoserine phosphatase activity(GO:0004647)
0.0 0.4 GO:0019104 DNA N-glycosylase activity(GO:0019104)
0.0 0.1 GO:0003962 cystathionine gamma-synthase activity(GO:0003962)
0.0 0.4 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.0 0.2 GO:0015288 porin activity(GO:0015288) wide pore channel activity(GO:0022829)
0.0 0.6 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.0 0.9 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.3 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.0 0.1 GO:0004156 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity(GO:0003848) dihydropteroate synthase activity(GO:0004156)
0.0 0.3 GO:0004869 cysteine-type endopeptidase inhibitor activity(GO:0004869)
0.0 0.1 GO:0030620 U2 snRNA binding(GO:0030620) pre-mRNA intronic binding(GO:0097157)
0.0 0.2 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
0.0 0.4 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.0 0.2 GO:0004605 phosphatidate cytidylyltransferase activity(GO:0004605)
0.0 0.3 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.0 0.2 GO:0003913 DNA photolyase activity(GO:0003913)
0.0 0.2 GO:0051184 cofactor transporter activity(GO:0051184)
0.0 0.1 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.0 0.3 GO:0003955 NAD(P)H dehydrogenase (quinone) activity(GO:0003955)
0.0 0.1 GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity(GO:0004514)
0.0 0.1 GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity(GO:0010309)
0.0 0.1 GO:0016842 amidine-lyase activity(GO:0016842)
0.0 0.1 GO:0052635 C-20 gibberellin 2-beta-dioxygenase activity(GO:0052635)
0.0 0.2 GO:0015210 pyrimidine nucleobase transmembrane transporter activity(GO:0005350) uracil transmembrane transporter activity(GO:0015210)
0.0 0.2 GO:0008381 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.0 0.2 GO:0016744 transferase activity, transferring aldehyde or ketonic groups(GO:0016744)
0.0 0.2 GO:0003968 RNA-directed RNA polymerase activity(GO:0003968)
0.0 0.2 GO:0045547 dehydrodolichyl diphosphate synthase activity(GO:0045547)
0.0 0.5 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 2.8 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.1 GO:0042392 sphingosine-1-phosphate phosphatase activity(GO:0042392) lipid phosphatase activity(GO:0042577)
0.0 0.1 GO:0004348 glucosylceramidase activity(GO:0004348)
0.0 0.1 GO:0050664 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.0 0.1 GO:0004412 homoserine dehydrogenase activity(GO:0004412)
0.0 0.2 GO:0004372 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.0 0.3 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.0 1.2 GO:0004185 serine-type carboxypeptidase activity(GO:0004185) serine-type exopeptidase activity(GO:0070008)
0.0 0.3 GO:0004784 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.0 0.6 GO:0008810 cellulase activity(GO:0008810)
0.0 0.3 GO:0016844 strictosidine synthase activity(GO:0016844)
0.0 0.2 GO:0052854 very-long-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052852) long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity(GO:0052853) medium-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052854)
0.0 0.2 GO:0010340 carboxyl-O-methyltransferase activity(GO:0010340)
0.0 0.2 GO:0016742 hydroxymethyl-, formyl- and related transferase activity(GO:0016742)
0.0 0.3 GO:0000175 3'-5'-exoribonuclease activity(GO:0000175)
0.0 0.4 GO:0032296 ribonuclease III activity(GO:0004525) double-stranded RNA-specific ribonuclease activity(GO:0032296)
0.0 0.5 GO:0004693 cyclin-dependent protein serine/threonine kinase activity(GO:0004693) cyclin-dependent protein kinase activity(GO:0097472)
0.0 0.2 GO:0001653 peptide receptor activity(GO:0001653)
0.0 0.3 GO:0030983 mismatched DNA binding(GO:0030983)
0.0 0.1 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.3 GO:0008061 chitin binding(GO:0008061)
0.0 1.3 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.3 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.0 0.2 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.0 0.2 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.0 0.2 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.0 0.1 GO:0003861 3-isopropylmalate dehydratase activity(GO:0003861)
0.0 0.4 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.0 0.1 GO:0043425 bHLH transcription factor binding(GO:0043425)
0.0 0.7 GO:0018024 histone-lysine N-methyltransferase activity(GO:0018024)
0.0 0.1 GO:0050307 sucrose-phosphate phosphatase activity(GO:0050307)
0.0 0.1 GO:0051377 mannose-ethanolamine phosphotransferase activity(GO:0051377)
0.0 0.1 GO:0016454 serine C-palmitoyltransferase activity(GO:0004758) C-palmitoyltransferase activity(GO:0016454)
0.0 0.6 GO:0008171 O-methyltransferase activity(GO:0008171)
0.0 0.1 GO:0004044 amidophosphoribosyltransferase activity(GO:0004044)
0.0 0.0 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.0 4.8 GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981)
0.0 0.5 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.0 0.1 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.0 0.4 GO:0051539 4 iron, 4 sulfur cluster binding(GO:0051539)
0.0 0.3 GO:0005227 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.0 0.2 GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.0 0.1 GO:0004345 glucose-6-phosphate dehydrogenase activity(GO:0004345)
0.0 0.3 GO:0003951 NAD+ kinase activity(GO:0003951)
0.0 0.4 GO:0016597 amino acid binding(GO:0016597)
0.0 0.1 GO:0003785 actin monomer binding(GO:0003785)
0.0 0.2 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.0 1.1 GO:0015144 carbohydrate transmembrane transporter activity(GO:0015144)
0.0 0.0 GO:0046027 phospholipid:diacylglycerol acyltransferase activity(GO:0046027)
0.0 0.1 GO:0033613 activating transcription factor binding(GO:0033613)
0.0 0.2 GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538)
0.0 0.1 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
0.0 1.0 GO:0008017 microtubule binding(GO:0008017)
0.0 0.2 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
0.0 0.1 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.0 0.2 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.5 GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity(GO:0015450)
0.0 0.1 GO:0010313 phytochrome binding(GO:0010313)
0.0 0.1 GO:0004566 beta-glucuronidase activity(GO:0004566)
0.0 0.0 GO:0010331 gibberellin binding(GO:0010331)
0.0 0.0 GO:0033741 adenylyl-sulfate reductase activity(GO:0009973) adenylyl-sulfate reductase (glutathione) activity(GO:0033741)
0.0 0.0 GO:0004359 glutaminase activity(GO:0004359)
0.0 0.0 GO:0005093 Rab GDP-dissociation inhibitor activity(GO:0005093)
0.0 0.5 GO:0033612 receptor serine/threonine kinase binding(GO:0033612)
0.0 0.0 GO:0010280 UDP-L-rhamnose synthase activity(GO:0010280) UDP-glucose 4,6-dehydratase activity(GO:0050377)
0.0 0.1 GO:1990757 ubiquitin ligase activator activity(GO:1990757)
0.0 0.2 GO:0008139 nuclear localization sequence binding(GO:0008139)
0.0 0.1 GO:0015271 outward rectifier potassium channel activity(GO:0015271)
0.0 0.6 GO:0001871 pattern binding(GO:0001871) polysaccharide binding(GO:0030247)
0.0 0.2 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.4 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.0 0.3 GO:0015205 nucleobase transmembrane transporter activity(GO:0015205)
0.0 0.2 GO:0008266 poly(U) RNA binding(GO:0008266)
0.0 0.5 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.0 0.1 GO:0008131 primary amine oxidase activity(GO:0008131)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 4.8 PID CMYB PATHWAY C-MYB transcription factor network
0.2 0.7 PID MYC REPRESS PATHWAY Validated targets of C-MYC transcriptional repression
0.1 0.6 PID AP1 PATHWAY AP-1 transcription factor network
0.1 0.5 PID ATM PATHWAY ATM pathway
0.1 0.3 PID BARD1 PATHWAY BARD1 signaling events
0.1 0.3 PID MYC PATHWAY C-MYC pathway
0.1 0.1 PID P73PATHWAY p73 transcription factor network
0.1 0.1 PID INTEGRIN A4B1 PATHWAY Alpha4 beta1 integrin signaling events
0.1 0.4 ST FAS SIGNALING PATHWAY Fas Signaling Pathway
0.1 0.3 NABA MATRISOME ASSOCIATED Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors
0.0 0.5 PID P53 DOWNSTREAM PATHWAY Direct p53 effectors
0.0 0.4 PID FANCONI PATHWAY Fanconi anemia pathway
0.0 0.3 PID CXCR4 PATHWAY CXCR4-mediated signaling events
0.0 0.0 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks
0.0 0.1 PID IL8 CXCR2 PATHWAY IL8- and CXCR2-mediated signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 6.7 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
0.2 0.5 REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer
0.2 0.5 REACTOME PURINE METABOLISM Genes involved in Purine metabolism
0.2 0.6 REACTOME FANCONI ANEMIA PATHWAY Genes involved in Fanconi Anemia pathway
0.1 0.2 REACTOME MEIOTIC SYNAPSIS Genes involved in Meiotic Synapsis
0.1 0.3 REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC Genes involved in Formation of tubulin folding intermediates by CCT/TriC
0.1 1.0 REACTOME GPCR LIGAND BINDING Genes involved in GPCR ligand binding
0.1 0.2 REACTOME GLUTATHIONE CONJUGATION Genes involved in Glutathione conjugation
0.0 0.1 REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways
0.0 0.1 REACTOME INNATE IMMUNE SYSTEM Genes involved in Innate Immune System
0.0 0.3 REACTOME GENERIC TRANSCRIPTION PATHWAY Genes involved in Generic Transcription Pathway
0.0 0.2 REACTOME G0 AND EARLY G1 Genes involved in G0 and Early G1
0.0 0.6 REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS Genes involved in ABCA transporters in lipid homeostasis
0.0 0.4 REACTOME ORC1 REMOVAL FROM CHROMATIN Genes involved in Orc1 removal from chromatin
0.0 0.1 REACTOME SEMAPHORIN INTERACTIONS Genes involved in Semaphorin interactions
0.0 0.3 REACTOME MEIOTIC RECOMBINATION Genes involved in Meiotic Recombination
0.0 0.2 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation
0.0 0.0 REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE Genes involved in Synthesis of PIPs at the Golgi membrane
0.0 0.1 REACTOME SIGNALING BY PDGF Genes involved in Signaling by PDGF