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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G22430
Z-value: 1.38
Transcription factors associated with AT2G22430
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G22430
|
AT2G22430 | homeobox protein 6 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB6 | arTal_v1_Chr2_-_9527845_9527845 | -0.56 | 1.9e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 3.66 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 2.67 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 2.48 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr4_-_10391298_10391298 Show fit | 2.41 |
AT4G18970.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr4_-_10390991_10390991 Show fit | 2.40 |
AT4G18970.2
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 2.21 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 2.00 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
|
| arTal_v1_Chr2_-_17827648_17827648 Show fit | 1.99 |
AT2G42840.1
|
protodermal factor 1 |
|
| arTal_v1_Chr5_+_18528267_18528267 Show fit | 1.95 |
AT5G45670.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr4_-_17606924_17607050 Show fit | 1.94 |
AT4G37450.1
AT4G37450.2 |
arabinogalactan protein 18 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G22430
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 14.8 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.5 | 10.0 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 6.6 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.1 | 6.5 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.1 | 5.2 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.1 | 5.1 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.1 | 4.7 | GO:0009809 | lignin biosynthetic process(GO:0009809) |
| 0.3 | 4.4 | GO:0010052 | guard cell differentiation(GO:0010052) |
| 0.1 | 4.2 | GO:0009690 | cytokinin metabolic process(GO:0009690) |
| 0.1 | 3.8 | GO:0016106 | sesquiterpenoid biosynthetic process(GO:0016106) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 63.9 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 21.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 16.3 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 7.9 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 7.9 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.0 | 3.2 | GO:0005874 | microtubule(GO:0005874) |
| 0.2 | 2.7 | GO:0009531 | secondary cell wall(GO:0009531) |
| 0.1 | 2.5 | GO:0090406 | pollen tube(GO:0090406) |
| 0.2 | 2.4 | GO:0042555 | MCM complex(GO:0042555) |
| 0.0 | 2.1 | GO:0015629 | actin cytoskeleton(GO:0015629) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 9.6 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.1 | 9.1 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 7.5 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 6.6 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.3 | 4.9 | GO:0004312 | fatty acid synthase activity(GO:0004312) |
| 0.2 | 4.7 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.5 | 4.2 | GO:0019137 | thioglucosidase activity(GO:0019137) |
| 0.2 | 4.0 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.1 | 3.7 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.2 | 3.5 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 3.0 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.2 | 1.7 | PID ATR PATHWAY | ATR signaling pathway |
| 0.3 | 0.9 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.2 | 0.9 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 0.7 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.1 | 0.6 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.1 | 0.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.8 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.4 | 2.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 1.0 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 0.9 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
| 0.2 | 0.9 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 0.8 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.2 | 0.8 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.0 | 0.8 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.2 | 0.5 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.5 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |