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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G20180
Z-value: 4.45
Transcription factors associated with AT2G20180
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G20180
|
AT2G20180 | phytochrome interacting factor 3-like 5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| PIL5 | arTal_v1_Chr2_-_8706900_8707009 | -0.08 | 6.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_2176446_2176446 Show fit | 25.23 |
AT5G07010.1
|
sulfotransferase 2A |
|
| arTal_v1_Chr1_-_19698482_19698482 Show fit | 24.04 |
AT1G52890.1
|
NAC domain containing protein 19 |
|
| arTal_v1_Chr5_-_23896702_23896702 Show fit | 23.60 |
AT5G59220.2
|
PP2C protein (Clade A protein phosphatases type 2C) |
|
| arTal_v1_Chr5_-_23896939_23896939 Show fit | 23.14 |
AT5G59220.1
|
PP2C protein (Clade A protein phosphatases type 2C) |
|
| arTal_v1_Chr2_+_15830870_15830870 Show fit | 21.82 |
AT2G37750.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_5389952_5389952 Show fit | 21.72 |
AT1G15670.1
|
Galactose oxidase/kelch repeat superfamily protein |
|
| arTal_v1_Chr4_+_13653579_13653579 Show fit | 21.27 |
AT4G27260.1
|
Auxin-responsive GH3 family protein |
|
| arTal_v1_Chr3_+_23289243_23289243 Show fit | 20.31 |
AT3G63010.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr5_+_579744_579852 Show fit | 20.24 |
AT5G02580.1
AT5G02580.3 AT5G02580.2 |
argininosuccinate lyase |
|
| arTal_v1_Chr5_+_1672070_1672096 Show fit | 19.87 |
AT5G05600.1
AT5G05600.2 |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G20180
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 68.3 | GO:0001666 | response to hypoxia(GO:0001666) |
| 1.3 | 60.4 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.2 | 53.7 | GO:0009737 | response to abscisic acid(GO:0009737) |
| 0.6 | 45.6 | GO:0006972 | hyperosmotic response(GO:0006972) |
| 0.1 | 41.2 | GO:0009651 | response to salt stress(GO:0009651) |
| 3.6 | 36.3 | GO:0050691 | regulation of defense response to virus by host(GO:0050691) |
| 0.7 | 35.2 | GO:0009749 | response to glucose(GO:0009749) |
| 7.0 | 34.9 | GO:0060919 | auxin influx(GO:0060919) |
| 9.9 | 29.6 | GO:0007099 | centrosome cycle(GO:0007098) centriole replication(GO:0007099) centrosome organization(GO:0051297) centrosome duplication(GO:0051298) centriole assembly(GO:0098534) |
| 1.8 | 28.8 | GO:0006538 | glutamate catabolic process(GO:0006538) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 476.4 | GO:0005634 | nucleus(GO:0005634) |
| 0.1 | 222.3 | GO:0005886 | plasma membrane(GO:0005886) |
| 3.1 | 46.7 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.1 | 33.4 | GO:0016021 | integral component of membrane(GO:0016021) |
| 9.9 | 29.6 | GO:0005814 | centrosome(GO:0005813) centriole(GO:0005814) |
| 0.4 | 24.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 21.6 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 1.0 | 19.1 | GO:0031970 | organelle envelope lumen(GO:0031970) |
| 0.7 | 16.4 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
| 0.2 | 16.2 | GO:0005635 | nuclear envelope(GO:0005635) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 132.2 | GO:0044212 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 103.1 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.7 | 87.4 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 53.7 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.4 | 49.8 | GO:0019900 | kinase binding(GO:0019900) |
| 4.4 | 34.9 | GO:0010328 | auxin influx transmembrane transporter activity(GO:0010328) |
| 1.4 | 33.2 | GO:0097602 | cullin family protein binding(GO:0097602) |
| 0.1 | 32.9 | GO:0005509 | calcium ion binding(GO:0005509) |
| 9.6 | 28.8 | GO:0004353 | glutamate dehydrogenase [NAD(P)+] activity(GO:0004353) |
| 7.2 | 28.8 | GO:0070401 | NADP+ binding(GO:0070401) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 6.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.7 | 2.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.4 | 2.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.2 | 1.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.2 | 34.9 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 1.5 | 7.3 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.8 | 3.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 2.1 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.4 | 1.8 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |
| 0.0 | 0.3 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |