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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G20110
Z-value: 0.94
Transcription factors associated with AT2G20110
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G20110
|
AT2G20110 | Tesmin/TSO1-like CXC domain-containing protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT2G20110 | arTal_v1_Chr2_+_8684496_8684496 | 0.13 | 5.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 2.18 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr5_-_17005510_17005510 Show fit | 1.93 |
AT5G42530.1
|
hypothetical protein |
|
| arTal_v1_Chr2_+_6213972_6213972 Show fit | 1.83 |
AT2G14560.2
AT2G14560.1 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr2_+_6213617_6213676 Show fit | 1.77 |
AT2G14560.3
AT2G14560.4 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr1_+_11310997_11310997 Show fit | 1.74 |
AT1G31580.1
|
ECS1 |
|
| arTal_v1_Chr4_+_6491017_6491017 Show fit | 1.64 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr4_+_8294446_8294452 Show fit | 1.64 |
AT4G14400.2
AT4G14400.3 |
ankyrin repeat family protein |
|
| arTal_v1_Chr3_+_19239305_19239412 Show fit | 1.62 |
AT3G51860.1
AT3G51860.2 |
cation exchanger 3 |
|
| arTal_v1_Chr4_+_8294165_8294165 Show fit | 1.49 |
AT4G14400.1
|
ankyrin repeat family protein |
|
| arTal_v1_Chr1_-_27569823_27569823 Show fit | 1.46 |
AT1G73330.1
|
drought-repressed 4 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G20110
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 4.6 | GO:1902288 | regulation of defense response to oomycetes(GO:1902288) |
| 0.0 | 3.5 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.2 | 3.3 | GO:0010112 | regulation of systemic acquired resistance(GO:0010112) |
| 0.7 | 2.2 | GO:0010266 | response to vitamin B1(GO:0010266) |
| 0.2 | 2.2 | GO:0010044 | response to aluminum ion(GO:0010044) |
| 0.1 | 2.2 | GO:0009682 | induced systemic resistance(GO:0009682) |
| 0.2 | 2.1 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) regulation of peptidase activity(GO:0052547) |
| 0.6 | 1.8 | GO:0016046 | detection of fungus(GO:0016046) |
| 0.1 | 1.8 | GO:0000266 | mitochondrial fission(GO:0000266) |
| 0.1 | 1.8 | GO:0030091 | protein repair(GO:0030091) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.2 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
| 0.0 | 2.3 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 1.3 | GO:0009504 | cell plate(GO:0009504) |
| 0.0 | 1.3 | GO:0044217 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.2 | 1.1 | GO:0000214 | tRNA-intron endonuclease complex(GO:0000214) |
| 0.1 | 1.1 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 1.0 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 1.0 | GO:0016604 | nuclear body(GO:0016604) |
| 0.2 | 0.9 | GO:0034663 | endoplasmic reticulum chaperone complex(GO:0034663) |
| 0.1 | 0.9 | GO:0005787 | signal peptidase complex(GO:0005787) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.2 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.0 | 4.3 | GO:0020037 | heme binding(GO:0020037) |
| 0.1 | 2.2 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.6 | 1.8 | GO:0052625 | 4-aminobenzoate amino acid synthetase activity(GO:0052625) benzoate amino acid synthetase activity(GO:0052626) vanillate amino acid synthetase activity(GO:0052627) 4-hydroxybenzoate amino acid synthetase activity(GO:0052628) |
| 0.3 | 1.8 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
| 0.3 | 1.7 | GO:0015369 | calcium:proton antiporter activity(GO:0015369) |
| 0.3 | 1.7 | GO:0080109 | indole-3-acetonitrile nitrile hydratase activity(GO:0080109) |
| 0.0 | 1.7 | GO:0019900 | kinase binding(GO:0019900) |
| 0.0 | 1.7 | GO:0005525 | GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561) |
| 0.2 | 1.6 | GO:0035252 | UDP-xylosyltransferase activity(GO:0035252) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.1 | 0.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.2 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.0 | 0.2 | PID SHP2 PATHWAY | SHP2 signaling |
| 0.1 | 0.1 | ST G ALPHA I PATHWAY | G alpha i Pathway |
| 0.1 | 0.1 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
| 0.0 | 0.1 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.2 | 0.7 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.2 | 0.5 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.1 | 0.5 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.1 | 0.4 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.0 | 0.3 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 0.2 | REACTOME FRS2 MEDIATED CASCADE | Genes involved in FRS2-mediated cascade |
| 0.1 | 0.2 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.1 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.0 | 0.1 | REACTOME PROTEIN FOLDING | Genes involved in Protein folding |