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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G18550
Z-value: 0.99
Transcription factors associated with AT2G18550
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G18550
|
AT2G18550 | homeobox protein 21 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB21 | arTal_v1_Chr2_-_8051316_8051316 | -0.36 | 6.1e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_6927736_6927736 Show fit | 1.27 |
AT1G19960.1
|
transcription factor |
|
| arTal_v1_Chr5_-_17005510_17005510 Show fit | 1.25 |
AT5G42530.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_26141726_26141836 Show fit | 1.17 |
AT1G69530.2
AT1G69530.1 AT1G69530.3 AT1G69530.5 AT1G69530.4 |
expansin A1 |
|
| arTal_v1_Chr1_+_7949476_7949476 Show fit | 1.15 |
AT1G22500.1
|
RING/U-box superfamily protein |
|
| arTal_v1_Chr1_+_11310997_11310997 Show fit | 1.13 |
AT1G31580.1
|
ECS1 |
|
| arTal_v1_Chr4_+_18130237_18130237 Show fit | 1.02 |
AT4G38860.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr1_-_26726652_26726652 Show fit | 1.01 |
AT1G70890.1
|
MLP-like protein 43 |
|
| arTal_v1_Chr5_+_22038165_22038165 Show fit | 1.01 |
AT5G54270.1
|
light-harvesting chlorophyll B-binding protein 3 |
|
| arTal_v1_Chr1_-_28245453_28245581 Show fit | 1.00 |
AT1G75250.1
AT1G75250.2 |
RAD-like 6 |
|
| arTal_v1_Chr1_-_5133860_5133860 Show fit | 1.00 |
AT1G14880.1
|
PLANT CADMIUM RESISTANCE 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G18550
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.6 | GO:0010600 | regulation of auxin biosynthetic process(GO:0010600) |
| 0.4 | 2.0 | GO:0033591 | response to L-ascorbic acid(GO:0033591) |
| 0.2 | 2.0 | GO:0010158 | abaxial cell fate specification(GO:0010158) |
| 0.2 | 1.9 | GO:0030104 | water homeostasis(GO:0030104) |
| 0.1 | 1.9 | GO:0009098 | leucine biosynthetic process(GO:0009098) |
| 0.1 | 1.9 | GO:2000033 | regulation of seed dormancy process(GO:2000033) |
| 0.0 | 1.8 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.3 | 1.6 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.1 | 1.6 | GO:0055069 | zinc ion homeostasis(GO:0055069) |
| 0.3 | 1.5 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.7 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 4.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 3.5 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 1.9 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.2 | 1.8 | GO:0010168 | ER body(GO:0010168) |
| 0.0 | 1.7 | GO:0042644 | chloroplast nucleoid(GO:0042644) |
| 0.1 | 1.2 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.1 | 1.2 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.0 | 1.2 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.0 | 1.0 | GO:0010319 | stromule(GO:0010319) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.9 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 3.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.0 | 2.5 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.1 | 2.2 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 1.8 | GO:0103075 | indole-3-pyruvate monooxygenase activity(GO:0103075) |
| 0.4 | 1.7 | GO:0003852 | 2-isopropylmalate synthase activity(GO:0003852) |
| 0.4 | 1.6 | GO:0004350 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.0 | 1.6 | GO:0043531 | ADP binding(GO:0043531) |
| 0.1 | 1.5 | GO:0080161 | auxin transmembrane transporter activity(GO:0080161) |
| 0.2 | 1.3 | GO:0050017 | L-3-cyanoalanine synthase activity(GO:0050017) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.4 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.1 | 0.4 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.0 | 0.3 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.2 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.0 | 0.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.1 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.0 | 0.1 | PID SHP2 PATHWAY | SHP2 signaling |
| 0.0 | 0.0 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.6 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.0 | 0.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.3 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.0 | 0.3 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.1 | 0.2 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.0 | 0.2 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.1 | REACTOME DOWNSTREAM SIGNALING OF ACTIVATED FGFR | Genes involved in Downstream signaling of activated FGFR |
| 0.0 | 0.1 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.0 | 0.1 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.0 | 0.1 | REACTOME MITOTIC G2 G2 M PHASES | Genes involved in Mitotic G2-G2/M phases |