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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G18350
Z-value: 0.66
Transcription factors associated with AT2G18350
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G18350
|
AT2G18350 | homeobox protein 24 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB24 | arTal_v1_Chr2_-_7972396_7972396 | 0.37 | 5.4e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_4794664_4794756 Show fit | 1.54 |
AT1G13990.1
AT1G13990.2 AT1G13990.3 |
plant/protein |
|
| arTal_v1_Chr4_+_9407611_9407611 Show fit | 1.44 |
AT4G16740.4
AT4G16740.3 AT4G16740.1 |
terpene synthase 03 |
|
| arTal_v1_Chr3_-_9575215_9575215 Show fit | 1.42 |
AT3G26170.1
|
cytochrome P450, family 71, subfamily B, polypeptide 19 |
|
| arTal_v1_Chr1_-_16917053_16917053 Show fit | 1.33 |
AT1G44800.1
|
nodulin MtN21 /EamA-like transporter family protein |
|
| arTal_v1_Chr1_+_5290747_5290747 Show fit | 1.27 |
AT1G15380.2
|
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr1_+_5290582_5290582 Show fit | 1.25 |
AT1G15380.1
|
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_+_22216540_22216540 Show fit | 1.22 |
AT3G60140.2
AT3G60140.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 1.21 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_-_17076417_17076417 Show fit | 1.20 |
AT1G45145.1
|
thioredoxin H-type 5 |
|
| arTal_v1_Chr4_+_5244865_5244865 Show fit | 1.18 |
AT4G08300.1
|
nodulin MtN21 /EamA-like transporter family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G18350
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.1 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.4 | 3.9 | GO:0045836 | positive regulation of meiotic nuclear division(GO:0045836) |
| 0.0 | 3.8 | GO:0016192 | vesicle-mediated transport(GO:0016192) |
| 0.0 | 2.8 | GO:0007568 | aging(GO:0007568) |
| 0.1 | 2.6 | GO:0080027 | response to herbivore(GO:0080027) |
| 0.0 | 2.6 | GO:0009624 | response to nematode(GO:0009624) |
| 0.3 | 2.3 | GO:0006597 | spermine biosynthetic process(GO:0006597) |
| 0.3 | 2.0 | GO:0043090 | amino acid import(GO:0043090) |
| 0.1 | 2.0 | GO:0007166 | cell surface receptor signaling pathway(GO:0007166) |
| 0.0 | 2.0 | GO:0071805 | cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.1 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.1 | 2.2 | GO:0031307 | intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307) |
| 0.0 | 1.8 | GO:0090406 | pollen tube(GO:0090406) |
| 0.2 | 1.3 | GO:0000214 | tRNA-intron endonuclease complex(GO:0000214) |
| 0.1 | 1.3 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.0 | 1.3 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 1.3 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 1.0 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 0.7 | GO:0000118 | histone deacetylase complex(GO:0000118) |
| 0.1 | 0.5 | GO:0000783 | telomere cap complex(GO:0000782) nuclear telomere cap complex(GO:0000783) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.9 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.0 | 2.7 | GO:0032561 | GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561) |
| 0.6 | 2.6 | GO:0052578 | alpha-farnesene synthase activity(GO:0052578) |
| 0.5 | 2.3 | GO:0016768 | spermine synthase activity(GO:0016768) |
| 0.0 | 2.3 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 2.2 | GO:0019900 | kinase binding(GO:0019900) |
| 0.0 | 2.1 | GO:0015079 | potassium ion transmembrane transporter activity(GO:0015079) |
| 0.0 | 1.9 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.0 | 1.9 | GO:0043130 | ubiquitin binding(GO:0043130) |
| 0.0 | 1.7 | GO:0003779 | actin binding(GO:0003779) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
| 0.1 | 0.3 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.1 | 0.3 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.2 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.2 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
| 0.0 | 0.1 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.0 | 0.0 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.8 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.5 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.0 | 0.5 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.0 | 0.4 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.1 | 0.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.3 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
| 0.0 | 0.3 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.1 | 0.2 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.1 | 0.2 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.0 | 0.2 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |