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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G18060
Z-value: 1.07
Transcription factors associated with AT2G18060
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G18060
|
AT2G18060 | vascular related NAC-domain protein 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| VND1 | arTal_v1_Chr2_-_7851553_7851606 | 0.35 | 6.9e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 5.40 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 5.35 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 5.02 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 4.77 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 4.54 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 4.31 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 4.23 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr1_+_10892445_10892445 Show fit | 4.18 |
AT1G30700.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr1_+_27538190_27538190 Show fit | 4.12 |
AT1G73220.1
|
organic cation/carnitine transporter1 |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 3.97 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G18060
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 17.0 | GO:0071453 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.1 | 16.1 | GO:0007568 | aging(GO:0007568) |
| 0.0 | 12.3 | GO:0006508 | proteolysis(GO:0006508) |
| 2.6 | 7.8 | GO:0016124 | tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124) |
| 0.1 | 7.2 | GO:0010200 | response to chitin(GO:0010200) |
| 0.4 | 7.1 | GO:0006826 | iron ion transport(GO:0006826) |
| 1.4 | 7.0 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 2.2 | 6.7 | GO:0031115 | negative regulation of microtubule polymerization(GO:0031115) |
| 0.1 | 6.6 | GO:0009744 | response to sucrose(GO:0009744) |
| 0.7 | 6.5 | GO:0051410 | detoxification of nitrogen compound(GO:0051410) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 11.2 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.1 | 10.1 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.4 | 5.9 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.1 | 5.2 | GO:0005770 | late endosome(GO:0005770) |
| 0.1 | 5.2 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 5.1 | GO:0000123 | histone acetyltransferase complex(GO:0000123) |
| 0.8 | 5.0 | GO:0005776 | autophagosome(GO:0005776) |
| 1.6 | 4.9 | GO:0005814 | centrosome(GO:0005813) centriole(GO:0005814) |
| 0.0 | 4.7 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 4.6 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 10.2 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 10.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 9.8 | GO:0019900 | kinase binding(GO:0019900) |
| 1.0 | 9.3 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 0.1 | 9.2 | GO:0008234 | cysteine-type peptidase activity(GO:0008234) |
| 0.1 | 8.9 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.5 | 7.2 | GO:0003978 | UDP-glucose 4-epimerase activity(GO:0003978) |
| 0.0 | 7.1 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.4 | 6.7 | GO:0005381 | iron ion transmembrane transporter activity(GO:0005381) |
| 1.1 | 6.5 | GO:0080109 | indole-3-acetonitrile nitrile hydratase activity(GO:0080109) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 2.5 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.5 | 1.4 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.4 | 1.3 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.3 | 1.3 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.2 | 1.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.8 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.2 | 0.5 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.4 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.3 | 0.3 | PID EPHA2 FWD PATHWAY | EPHA2 forward signaling |
| 0.1 | 0.3 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.2 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.9 | 2.8 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.7 | 2.8 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.3 | 2.1 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.5 | 1.9 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.2 | 1.6 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.4 | 1.3 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.3 | 1.3 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.2 | 1.0 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.2 | 0.7 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |