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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G15740
Z-value: 4.85
Transcription factors associated with AT2G15740
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G15740
|
AT2G15740 | C2H2-like zinc finger protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT2G15740 | arTal_v1_Chr2_-_6857735_6857735 | 0.38 | 4.8e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_17855637_17855637 Show fit | 26.07 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 24.11 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 23.60 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr2_+_19375985_19375985 Show fit | 22.02 |
AT2G47190.1
|
myb domain protein 2 |
|
| arTal_v1_Chr3_+_17724400_17724400 Show fit | 21.97 |
AT3G48020.1
|
hypothetical protein |
|
| arTal_v1_Chr5_+_3239617_3239617 Show fit | 21.34 |
AT5G10300.2
|
methyl esterase 5 |
|
| arTal_v1_Chr2_-_18646606_18646606 Show fit | 21.14 |
AT2G45220.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr5_+_3239455_3239455 Show fit | 21.00 |
AT5G10300.1
|
methyl esterase 5 |
|
| arTal_v1_Chr1_-_10356482_10356482 Show fit | 20.90 |
AT1G29640.1
|
senescence regulator (Protein of unknown function, DUF584) |
|
| arTal_v1_Chr1_-_19698482_19698482 Show fit | 20.39 |
AT1G52890.1
|
NAC domain containing protein 19 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G15740
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 152.7 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 94.3 | GO:0044257 | cellular protein catabolic process(GO:0044257) |
| 1.0 | 50.3 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 10.6 | 42.3 | GO:0016139 | glycoside catabolic process(GO:0016139) |
| 0.7 | 41.5 | GO:0009694 | jasmonic acid metabolic process(GO:0009694) |
| 13.8 | 41.4 | GO:0016110 | tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124) |
| 2.2 | 39.9 | GO:0015996 | chlorophyll catabolic process(GO:0015996) pigment catabolic process(GO:0046149) |
| 0.2 | 38.6 | GO:0016192 | vesicle-mediated transport(GO:0016192) |
| 12.7 | 38.1 | GO:0016046 | detection of fungus(GO:0016046) |
| 2.3 | 36.9 | GO:0006538 | glutamate catabolic process(GO:0006538) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 455.7 | GO:0005634 | nucleus(GO:0005634) |
| 0.1 | 69.3 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.2 | 66.1 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.6 | 62.1 | GO:0000139 | Golgi membrane(GO:0000139) |
| 2.9 | 43.2 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.4 | 24.7 | GO:0005615 | extracellular space(GO:0005615) extracellular region part(GO:0044421) |
| 0.1 | 24.1 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.7 | 22.9 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
| 0.8 | 20.1 | GO:0000145 | exocyst(GO:0000145) |
| 0.5 | 17.5 | GO:0005764 | lysosome(GO:0005764) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 90.8 | GO:0001067 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.5 | 76.8 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.6 | 74.5 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.3 | 65.1 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 3.8 | 50.0 | GO:0052747 | sinapyl alcohol dehydrogenase activity(GO:0052747) |
| 0.4 | 48.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 5.0 | 45.0 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 10.1 | 40.3 | GO:0046593 | mandelonitrile lyase activity(GO:0046593) |
| 12.7 | 38.1 | GO:0052627 | 4-aminobenzoate amino acid synthetase activity(GO:0052625) benzoate amino acid synthetase activity(GO:0052626) vanillate amino acid synthetase activity(GO:0052627) 4-hydroxybenzoate amino acid synthetase activity(GO:0052628) |
| 3.7 | 36.9 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 4.2 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.3 | 2.4 | PID ATR PATHWAY | ATR signaling pathway |
| 0.3 | 2.1 | PID P73PATHWAY | p73 transcription factor network |
| 0.3 | 1.2 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 5.6 | 16.9 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 1.4 | 8.3 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 1.3 | 8.0 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.6 | 5.1 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 1.4 | 4.2 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 1.0 | 3.0 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.4 | 2.8 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
| 0.5 | 2.7 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.3 | 2.4 | REACTOME TRANSCRIPTION COUPLED NER TC NER | Genes involved in Transcription-coupled NER (TC-NER) |
| 0.2 | 2.1 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |