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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G04038
Z-value: 2.10
Transcription factors associated with AT2G04038
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G04038
|
AT2G04038 | basic leucine-zipper 48 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| bZIP48 | arTal_v1_Chr2_+_1331919_1331919 | -0.59 | 9.5e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 19.71 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 16.17 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr2_+_14577083_14577083 Show fit | 14.86 |
AT2G34620.1
|
Mitochondrial transcription termination factor family protein |
|
| arTal_v1_Chr5_+_26298728_26298728 Show fit | 14.70 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
|
| arTal_v1_Chr1_-_59215_59215 Show fit | 12.39 |
AT1G01120.1
|
3-ketoacyl-CoA synthase 1 |
|
| arTal_v1_Chr1_-_1043887_1043887 Show fit | 10.94 |
AT1G04040.1
|
HAD superfamily, subfamily IIIB acid phosphatase |
|
| arTal_v1_Chr3_+_23345754_23345754 Show fit | 10.63 |
AT3G63200.1
|
PATATIN-like protein 9 |
|
| arTal_v1_Chr1_-_4530222_4530222 Show fit | 10.51 |
AT1G13250.1
|
galacturonosyltransferase-like 3 |
|
| arTal_v1_Chr1_+_7886323_7886323 Show fit | 10.08 |
AT1G22330.1
|
RNA-binding (RRM/RBD/RNP motifs) family protein |
|
| arTal_v1_Chr1_+_19454798_19454798 Show fit | 9.97 |
AT1G52230.1
|
photosystem I subunit H2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G04038
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 24.1 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 3.3 | 19.7 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) positive regulation of reactive oxygen species biosynthetic process(GO:1903428) |
| 1.0 | 19.6 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.6 | 19.4 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.3 | 18.6 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.2 | 17.5 | GO:0019684 | photosynthesis, light reaction(GO:0019684) |
| 0.2 | 17.4 | GO:0009627 | systemic acquired resistance(GO:0009627) |
| 0.5 | 17.0 | GO:0009827 | plant-type cell wall modification(GO:0009827) |
| 1.4 | 16.8 | GO:0042374 | phylloquinone biosynthetic process(GO:0042372) phylloquinone metabolic process(GO:0042374) |
| 0.0 | 13.1 | GO:0006412 | translation(GO:0006412) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 117.0 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 35.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 4.0 | 32.0 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.1 | 31.7 | GO:0042651 | photosynthetic membrane(GO:0034357) thylakoid membrane(GO:0042651) |
| 3.3 | 29.4 | GO:0009522 | photosystem I(GO:0009522) |
| 0.1 | 26.4 | GO:0048046 | apoplast(GO:0048046) |
| 0.9 | 22.5 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.8 | 12.6 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.0 | 12.5 | GO:0022626 | cytosolic ribosome(GO:0022626) |
| 0.1 | 11.9 | GO:0009579 | thylakoid(GO:0009579) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 32.0 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 5.3 | 21.3 | GO:0070330 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330) |
| 0.0 | 20.3 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.8 | 19.7 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.7 | 19.4 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 3.4 | 16.8 | GO:0031956 | medium-chain fatty acid-CoA ligase activity(GO:0031956) |
| 0.5 | 15.9 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.0 | 13.1 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.4 | 12.5 | GO:0016597 | amino acid binding(GO:0016597) |
| 1.4 | 12.4 | GO:0009922 | fatty acid elongase activity(GO:0009922) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.6 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.0 | 0.2 | PID ATM PATHWAY | ATM pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 8.3 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 1.0 | 4.8 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.5 | 4.6 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.5 | 4.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 1.6 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
| 0.0 | 0.2 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
| 0.0 | 0.2 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |