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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G03500
Z-value: 1.53
Transcription factors associated with AT2G03500
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G03500
|
AT2G03500 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT2G03500 | arTal_v1_Chr2_+_1059545_1059545 | 0.66 | 1.2e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 7.18 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 6.56 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 5.61 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr4_+_8392825_8392825 Show fit | 5.49 |
AT4G14630.1
|
germin-like protein 9 |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 5.41 |
AT1G54575.2
|
hypothetical protein |
|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 5.27 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 5.01 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 4.97 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr2_+_12600914_12601033 Show fit | 4.96 |
AT2G29350.2
AT2G29350.1 AT2G29350.3 |
senescence-associated gene 13 |
|
| arTal_v1_Chr1_+_25765718_25765718 Show fit | 4.93 |
AT1G68620.1
|
alpha/beta-Hydrolases superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G03500
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 33.7 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 25.4 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.2 | 19.9 | GO:0007568 | aging(GO:0007568) |
| 0.5 | 18.0 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.4 | 17.5 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.4 | 16.1 | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) |
| 0.1 | 15.6 | GO:0010228 | vegetative to reproductive phase transition of meristem(GO:0010228) |
| 0.2 | 13.9 | GO:0050684 | regulation of mRNA processing(GO:0050684) |
| 0.2 | 13.8 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 0.2 | 13.8 | GO:0009867 | jasmonic acid mediated signaling pathway(GO:0009867) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 46.0 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 21.8 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.1 | 19.3 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 18.3 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.2 | 16.7 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.7 | 13.1 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 12.9 | GO:0000785 | chromatin(GO:0000785) |
| 0.3 | 12.2 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 11.5 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.3 | 9.8 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 57.1 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 26.2 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 24.9 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.0 | 20.1 | GO:0000976 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.3 | 19.0 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.1 | 13.9 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 1.7 | 10.1 | GO:0080109 | indole-3-acetonitrile nitrile hydratase activity(GO:0080109) |
| 0.2 | 9.9 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) ubiquitin-like protein conjugating enzyme activity(GO:0061650) |
| 0.2 | 9.8 | GO:0036459 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) |
| 0.2 | 9.7 | GO:0005096 | GTPase activator activity(GO:0005096) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.7 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.6 | 2.8 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.2 | 2.6 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.8 | 2.4 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.5 | 1.9 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.3 | 1.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.3 | 0.8 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.1 | 0.8 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.3 | 0.7 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
| 0.2 | 0.7 | PID ARF 3PATHWAY | Arf1 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 5.0 | REACTOME CIRCADIAN CLOCK | Genes involved in Circadian Clock |
| 0.8 | 4.7 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.8 | 3.9 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 1.0 | 3.1 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.5 | 2.5 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.7 | 2.2 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
| 0.6 | 2.2 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.5 | 1.9 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.1 | 1.3 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.3 | 1.0 | REACTOME POTASSIUM CHANNELS | Genes involved in Potassium Channels |