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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G03340
Z-value: 2.86
Transcription factors associated with AT2G03340
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G03340
|
AT2G03340 | WRKY DNA-binding protein 3 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY3 | arTal_v1_Chr2_-_1017222_1017222 | 0.90 | 1.2e-10 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_13101371_13101371 Show fit | 17.89 |
AT2G30750.1
|
cytochrome P450 family 71 polypeptide |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 17.24 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
|
| arTal_v1_Chr1_-_24433165_24433165 Show fit | 16.97 |
AT1G65690.1
|
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
|
| arTal_v1_Chr1_+_10892445_10892445 Show fit | 16.79 |
AT1G30700.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_+_19375985_19375985 Show fit | 16.30 |
AT2G47190.1
|
myb domain protein 2 |
|
| arTal_v1_Chr3_+_17724400_17724400 Show fit | 16.15 |
AT3G48020.1
|
hypothetical protein |
|
| arTal_v1_Chr3_+_9892791_9892791 Show fit | 14.59 |
AT3G26840.1
|
Esterase/lipase/thioesterase family protein |
|
| arTal_v1_Chr3_+_7581959_7581959 Show fit | 13.72 |
AT3G21520.1
|
transmembrane protein, putative (DUF679 domain membrane protein 1) |
|
| arTal_v1_Chr1_-_25662276_25662276 Show fit | 13.43 |
AT1G68450.1
|
VQ motif-containing protein |
|
| arTal_v1_Chr5_-_14935885_14935885 Show fit | 12.86 |
AT5G37600.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G03340
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 40.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 26.3 | GO:0009620 | response to fungus(GO:0009620) |
| 0.3 | 25.1 | GO:0016036 | cellular response to phosphate starvation(GO:0016036) |
| 0.4 | 22.3 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.7 | 22.1 | GO:0007166 | cell surface receptor signaling pathway(GO:0007166) |
| 0.4 | 20.6 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 0.4 | 18.8 | GO:0009682 | induced systemic resistance(GO:0009682) |
| 0.4 | 16.4 | GO:0000723 | telomere maintenance(GO:0000723) telomere organization(GO:0032200) |
| 0.5 | 16.3 | GO:0010252 | auxin homeostasis(GO:0010252) |
| 1.0 | 15.4 | GO:0006538 | glutamate catabolic process(GO:0006538) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 231.9 | GO:0005886 | plasma membrane(GO:0005886) |
| 3.0 | 26.6 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.6 | 21.0 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.2 | 20.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 20.3 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.6 | 15.0 | GO:0000781 | chromosome, telomeric region(GO:0000781) |
| 0.2 | 14.6 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.6 | 14.3 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 11.6 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.2 | 9.4 | GO:0009504 | cell plate(GO:0009504) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 49.9 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 37.8 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.1 | 24.7 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 1.7 | 18.3 | GO:0003691 | double-stranded telomeric DNA binding(GO:0003691) |
| 2.3 | 16.3 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 1.5 | 15.2 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
| 1.0 | 15.1 | GO:0004124 | cysteine synthase activity(GO:0004124) |
| 1.0 | 14.6 | GO:0004144 | diacylglycerol O-acyltransferase activity(GO:0004144) |
| 0.2 | 13.3 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
| 1.8 | 12.9 | GO:0004356 | glutamate-ammonia ligase activity(GO:0004356) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.3 | 13.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.6 | 4.4 | PID P73PATHWAY | p73 transcription factor network |
| 0.5 | 3.7 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 1.7 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.4 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.6 | 10.3 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 1.2 | 7.3 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.7 | 6.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.8 | 3.2 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.3 | 3.1 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.4 | 1.7 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.2 | 1.7 | REACTOME REPAIR SYNTHESIS FOR GAP FILLING BY DNA POL IN TC NER | Genes involved in Repair synthesis for gap-filling by DNA polymerase in TC-NER |
| 0.3 | 1.5 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.1 | 1.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 0.7 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |