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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G02820
Z-value: 1.45
Transcription factors associated with AT2G02820
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G02820
|
AT2G02820 | myb domain protein 88 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB88 | arTal_v1_Chr2_-_807756_807895 | -0.17 | 4.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 4.37 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 3.81 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 3.30 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 3.28 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 3.26 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 3.26 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr5_-_15385247_15385320 Show fit | 3.00 |
AT5G38430.2
AT5G38430.1 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 2.93 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 2.91 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 2.89 |
AT3G01500.1
|
carbonic anhydrase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G02820
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 17.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 16.5 | GO:0006412 | translation(GO:0006412) |
| 0.8 | 15.6 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 13.7 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.9 | 12.3 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 11.2 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.2 | 10.6 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 1.5 | 8.7 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.7 | 7.4 | GO:0010196 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
| 0.2 | 7.4 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 78.3 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 62.8 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.0 | 38.0 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 22.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.5 | 21.0 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 19.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 15.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 11.5 | GO:0048046 | apoplast(GO:0048046) |
| 0.4 | 11.2 | GO:0009523 | photosystem II(GO:0009523) |
| 1.2 | 11.1 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 25.1 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 16.9 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.4 | 12.6 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.4 | 12.4 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.5 | 12.2 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.5 | 11.7 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.1 | 10.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 10.2 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.2 | 10.0 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.0 | 9.9 | GO:0005524 | ATP binding(GO:0005524) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 11.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.4 | 4.5 | PID ATR PATHWAY | ATR signaling pathway |
| 0.9 | 3.5 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.2 | 1.5 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.2 | 1.5 | PID ATM PATHWAY | ATM pathway |
| 0.1 | 1.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.3 | 1.2 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.2 | 1.0 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.8 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.3 | PID IFNG PATHWAY | IFN-gamma pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.9 | 11.4 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.3 | 6.9 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.5 | 3.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 2.3 | REACTOME ACTIVATION OF ATR IN RESPONSE TO REPLICATION STRESS | Genes involved in Activation of ATR in response to replication stress |
| 0.4 | 1.5 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.3 | 1.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.3 | 1.3 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.2 | 1.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 1.2 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.3 | 1.1 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |