Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT2G02080
Z-value: 1.17
Transcription factors associated with AT2G02080
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G02080
|
AT2G02080 | indeterminate(ID)-domain 4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| IDD4 | arTal_v1_Chr2_-_521707_521737 | 0.94 | 5.5e-14 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 4.06 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr3_-_21189859_21189967 Show fit | 3.99 |
AT3G57260.1
AT3G57260.2 |
beta-1,3-glucanase 2 |
|
| arTal_v1_Chr4_-_9201643_9201643 Show fit | 3.18 |
AT4G16260.2
AT4G16260.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr2_-_18077517_18077517 Show fit | 3.16 |
AT2G43570.1
|
chitinase |
|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 3.13 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr3_-_8007836_8007836 Show fit | 3.07 |
AT3G22600.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr2_+_6213972_6213972 Show fit | 2.90 |
AT2G14560.2
AT2G14560.1 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr1_+_23887809_23887809 Show fit | 2.89 |
AT1G64360.1
|
hypothetical protein |
|
| arTal_v1_Chr3_+_19239305_19239412 Show fit | 2.88 |
AT3G51860.1
AT3G51860.2 |
cation exchanger 3 |
|
| arTal_v1_Chr2_+_6213617_6213676 Show fit | 2.82 |
AT2G14560.3
AT2G14560.4 |
LURP-one-like protein (DUF567) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G02080
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 15.9 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.1 | 14.7 | GO:0006979 | response to oxidative stress(GO:0006979) |
| 0.1 | 11.4 | GO:0007568 | aging(GO:0007568) |
| 0.0 | 10.2 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.2 | 9.4 | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) |
| 0.0 | 9.2 | GO:0051603 | proteolysis involved in cellular protein catabolic process(GO:0051603) |
| 0.2 | 8.4 | GO:0090487 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.1 | 7.2 | GO:0009749 | response to glucose(GO:0009749) |
| 0.2 | 6.9 | GO:0072666 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.2 | 6.8 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 13.0 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 11.4 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 9.0 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 7.8 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.0 | 7.5 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.1 | 7.1 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 7.1 | GO:0005654 | nucleoplasm(GO:0005654) |
| 0.2 | 6.9 | GO:0005764 | lysosome(GO:0005764) |
| 0.4 | 6.7 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 6.4 | GO:0016604 | nuclear body(GO:0016604) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.9 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 10.3 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 9.4 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.1 | 8.7 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 8.3 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.0 | 8.2 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
| 0.0 | 8.0 | GO:0020037 | heme binding(GO:0020037) |
| 0.1 | 7.6 | GO:0010857 | calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857) |
| 0.1 | 7.3 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 6.6 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 2.0 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.4 | 1.9 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.1 | 1.0 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.2 | 0.9 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
| 0.1 | 0.9 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.9 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.1 | 0.8 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.7 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.2 | 0.6 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.1 | 0.6 | PID IL4 2PATHWAY | IL4-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.9 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.5 | 4.2 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.5 | 2.6 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.5 | 2.1 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.3 | 1.9 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.4 | 1.7 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.2 | 1.7 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.3 | 1.4 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.2 | 1.4 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.1 | 1.3 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |