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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G01930
Z-value: 1.00
Transcription factors associated with AT2G01930
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G01930
|
AT2G01930 | basic pentacysteine1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BPC1 | arTal_v1_Chr2_-_428900_428900 | -0.55 | 2.5e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 4.12 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr2_+_2199151_2199151 Show fit | 3.49 |
AT2G05790.1
|
O-Glycosyl hydrolases family 17 protein |
|
| arTal_v1_Chr5_+_26767599_26767599 Show fit | 3.21 |
AT5G67070.1
|
ralf-like 34 |
|
| arTal_v1_Chr2_-_1800472_1800472 Show fit | 3.16 |
AT2G05070.1
|
photosystem II light harvesting complex protein 2.2 |
|
| arTal_v1_Chr3_-_6882235_6882315 Show fit | 2.92 |
AT3G19820.3
AT3G19820.1 AT3G19820.2 |
cell elongation protein / DWARF1 / DIMINUTO (DIM) |
|
| arTal_v1_Chr2_-_12433796_12433796 Show fit | 2.92 |
AT2G28950.1
|
expansin A6 |
|
| arTal_v1_Chr2_+_1676999_1676999 Show fit | 2.85 |
AT2G04780.2
|
FASCICLIN-like arabinoogalactan 7 |
|
| arTal_v1_Chr2_+_15059763_15059763 Show fit | 2.82 |
AT2G35860.1
|
FASCICLIN-like arabinogalactan protein 16 precursor |
|
| arTal_v1_Chr1_+_17918207_17918207 Show fit | 2.81 |
AT1G48480.1
|
receptor-like kinase 1 |
|
| arTal_v1_Chr2_+_1676717_1676717 Show fit | 2.79 |
AT2G04780.1
|
FASCICLIN-like arabinoogalactan 7 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G01930
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.6 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.1 | 7.5 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.1 | 6.5 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.4 | 6.3 | GO:0048497 | maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497) |
| 0.2 | 6.1 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
| 1.0 | 5.1 | GO:0010450 | inflorescence meristem growth(GO:0010450) |
| 0.2 | 5.0 | GO:0046856 | phosphatidylinositol dephosphorylation(GO:0046856) |
| 0.2 | 4.9 | GO:0016132 | phytosteroid biosynthetic process(GO:0016129) brassinosteroid biosynthetic process(GO:0016132) |
| 0.3 | 4.4 | GO:0032544 | plastid translation(GO:0032544) |
| 0.5 | 3.3 | GO:1904278 | regulation of wax biosynthetic process(GO:1904276) positive regulation of wax biosynthetic process(GO:1904278) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 23.1 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 7.0 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 6.8 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 6.2 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 3.5 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.4 | 3.2 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.0 | 2.6 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.1 | 2.5 | GO:0010319 | stromule(GO:0010319) |
| 0.2 | 2.1 | GO:0016272 | prefoldin complex(GO:0016272) |
| 0.2 | 2.1 | GO:0045298 | tubulin complex(GO:0045298) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 8.7 | GO:0047259 | glucomannan 4-beta-mannosyltransferase activity(GO:0047259) |
| 0.1 | 5.9 | GO:0033612 | receptor serine/threonine kinase binding(GO:0033612) |
| 0.0 | 5.2 | GO:0046906 | tetrapyrrole binding(GO:0046906) |
| 0.2 | 5.1 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.3 | 4.4 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
| 0.0 | 4.2 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.2 | 4.1 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.2 | 3.9 | GO:0042973 | glucan endo-1,3-beta-D-glucosidase activity(GO:0042973) |
| 0.5 | 3.8 | GO:0001872 | (1->3)-beta-D-glucan binding(GO:0001872) |
| 0.3 | 3.5 | GO:0008526 | phosphatidylinositol transporter activity(GO:0008526) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.2 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.2 | 1.0 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.4 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.2 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.0 | 0.8 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.0 | 0.3 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |