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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G79580
Z-value: 0.46
Transcription factors associated with AT1G79580
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G79580
|
AT1G79580 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SMB | arTal_v1_Chr1_-_29943442_29943498 | -0.05 | 7.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 1.08 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr3_-_19643276_19643282 Show fit | 0.86 |
AT3G52970.1
AT3G52970.2 |
cytochrome P450, family 76, subfamily G, polypeptide 1 |
|
| arTal_v1_Chr5_+_1153740_1153740 Show fit | 0.84 |
AT5G04200.1
|
metacaspase 9 |
|
| arTal_v1_Chr1_+_5822309_5822309 Show fit | 0.82 |
AT1G17030.1
|
hypothetical protein |
|
| arTal_v1_Chr2_-_19291632_19291632 Show fit | 0.76 |
AT2G46950.2
AT2G46950.1 |
cytochrome P450, family 709, subfamily B, polypeptide 2 |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 0.76 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr3_+_5471735_5471735 Show fit | 0.74 |
AT3G16150.1
|
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein |
|
| arTal_v1_Chr1_+_27538190_27538190 Show fit | 0.71 |
AT1G73220.1
|
organic cation/carnitine transporter1 |
|
| arTal_v1_Chr1_+_9825169_9825169 Show fit | 0.70 |
AT1G28130.1
|
Auxin-responsive GH3 family protein |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 0.68 |
AT3G61930.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G79580
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.6 | GO:0046856 | phosphatidylinositol dephosphorylation(GO:0046856) |
| 0.0 | 1.6 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.0 | 1.6 | GO:0009809 | lignin biosynthetic process(GO:0009809) |
| 0.2 | 1.3 | GO:0080187 | floral organ senescence(GO:0080187) |
| 0.0 | 1.3 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 1.1 | GO:0090548 | response to nitrate starvation(GO:0090548) |
| 0.1 | 1.1 | GO:0023014 | signal transduction by protein phosphorylation(GO:0023014) |
| 0.0 | 1.1 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.3 | 1.0 | GO:0044277 | cell wall modification involved in abscission(GO:0009830) cell wall disassembly(GO:0044277) |
| 0.3 | 1.0 | GO:0016118 | tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 2.9 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 2.2 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 1.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 1.4 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 1.3 | GO:0015629 | actin cytoskeleton(GO:0015629) |
| 0.0 | 1.3 | GO:0010008 | endosome membrane(GO:0010008) |
| 0.0 | 1.2 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.1 | 1.0 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.0 | 0.8 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.9 | GO:0003779 | actin binding(GO:0003779) |
| 0.3 | 1.9 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.0 | 1.9 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 1.8 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 1.7 | GO:0004707 | MAP kinase activity(GO:0004707) |
| 0.0 | 1.5 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.0 | 1.5 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.0 | 1.4 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 1.4 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.2 | 1.3 | GO:0045549 | 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.6 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.4 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.4 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.4 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.0 | 0.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.1 | 0.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.2 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.7 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.1 | 0.5 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.1 | 0.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.4 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.1 | 0.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.3 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.2 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
| 0.1 | 0.2 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |
| 0.0 | 0.2 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.0 | 0.2 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |