Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT1G79180
Z-value: 0.57
Transcription factors associated with AT1G79180
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G79180
|
AT1G79180 | myb domain protein 63 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB63 | arTal_v1_Chr1_+_29786257_29786257 | 0.64 | 2.4e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_162905_162905 Show fit | 2.39 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_-_17166032_17166032 Show fit | 2.11 |
AT5G42800.1
|
dihydroflavonol 4-reductase |
|
| arTal_v1_Chr1_-_30053936_30053936 Show fit | 2.00 |
AT1G79900.1
|
Mitochondrial substrate carrier family protein |
|
| arTal_v1_Chr1_+_3066674_3066753 Show fit | 1.92 |
AT1G09500.1
AT1G09500.2 AT1G09500.3 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr3_-_19643276_19643282 Show fit | 1.91 |
AT3G52970.1
AT3G52970.2 |
cytochrome P450, family 76, subfamily G, polypeptide 1 |
|
| arTal_v1_Chr4_+_1464467_1464467 Show fit | 1.84 |
AT4G03320.1
|
translocon at the inner envelope membrane of chloroplasts 20-IV |
|
| arTal_v1_Chr4_-_7026224_7026224 Show fit | 1.77 |
AT4G11650.1
|
osmotin 34 |
|
| arTal_v1_Chr1_-_1996355_1996355 Show fit | 1.75 |
AT1G06520.1
|
glycerol-3-phosphate acyltransferase 1 |
|
| arTal_v1_Chr3_-_19564195_19564195 Show fit | 1.75 |
AT3G52780.2
|
Purple acid phosphatases superfamily protein |
|
| arTal_v1_Chr3_+_10520443_10520502 Show fit | 1.74 |
AT3G28210.1
AT3G28210.2 |
zinc finger (AN1-like) family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G79180
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.7 | GO:0036294 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) |
| 0.0 | 4.4 | GO:0016311 | dephosphorylation(GO:0016311) |
| 0.0 | 3.9 | GO:0006357 | regulation of transcription from RNA polymerase II promoter(GO:0006357) |
| 0.1 | 3.1 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.0 | 2.7 | GO:0010200 | response to chitin(GO:0010200) |
| 0.5 | 2.5 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 0.1 | 2.5 | GO:0009062 | fatty acid catabolic process(GO:0009062) |
| 0.0 | 2.3 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 0.3 | 2.2 | GO:1901332 | negative regulation of lateral root development(GO:1901332) |
| 0.1 | 2.1 | GO:0007166 | cell surface receptor signaling pathway(GO:0007166) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 4.6 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 2.5 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 2.5 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 2.4 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.3 | 2.1 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
| 0.1 | 2.0 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
| 0.0 | 2.0 | GO:0016592 | mediator complex(GO:0016592) |
| 0.0 | 2.0 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 1.8 | GO:0031012 | extracellular matrix(GO:0031012) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.6 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.0 | 4.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 3.9 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.6 | 3.4 | GO:0050302 | aryl-aldehyde oxidase activity(GO:0018488) indole-3-acetaldehyde oxidase activity(GO:0050302) |
| 0.2 | 3.1 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
| 0.7 | 2.9 | GO:0047782 | coniferin beta-glucosidase activity(GO:0047782) |
| 0.1 | 2.9 | GO:0003993 | acid phosphatase activity(GO:0003993) |
| 0.0 | 2.3 | GO:0036442 | hydrogen-exporting ATPase activity(GO:0036442) |
| 0.1 | 2.1 | GO:0004022 | alcohol dehydrogenase (NAD) activity(GO:0004022) |
| 0.7 | 2.0 | GO:1901474 | azole transmembrane transporter activity(GO:1901474) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.8 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
| 0.1 | 0.3 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.1 | 0.3 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.2 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.0 | 0.1 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
| 0.0 | 0.1 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
| 0.0 | 0.1 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.1 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.6 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.0 | 0.6 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.5 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.2 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.0 | 0.2 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.1 | 0.1 | REACTOME SIGNALING BY SCF KIT | Genes involved in Signaling by SCF-KIT |
| 0.0 | 0.1 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |