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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G78700
Z-value: 0.96
Transcription factors associated with AT1G78700
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G78700
|
AT1G78700 | BES1/BZR1 homolog 4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BEH4 | arTal_v1_Chr1_+_29599349_29599349 | -0.54 | 2.8e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 2.51 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 2.15 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 2.12 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr1_-_3880391_3880391 Show fit | 1.99 |
AT1G11545.1
|
xyloglucan endotransglucosylase/hydrolase 8 |
|
| arTal_v1_Chr5_-_2185972_2185972 Show fit | 1.90 |
AT5G07030.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr5_+_21020014_21020014 Show fit | 1.89 |
AT5G51750.1
|
subtilase 1.3 |
|
| arTal_v1_Chr1_-_22317070_22317070 Show fit | 1.85 |
AT1G60590.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr3_+_8610979_8610979 Show fit | 1.79 |
AT3G23840.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr3_+_23345754_23345754 Show fit | 1.78 |
AT3G63200.1
|
PATATIN-like protein 9 |
|
| arTal_v1_Chr1_+_2097106_2097106 Show fit | 1.78 |
AT1G06830.1
|
Glutaredoxin family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G78700
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 9.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 7.9 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.5 | 6.6 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.3 | 4.9 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 4.9 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.1 | 4.1 | GO:0045492 | xylan biosynthetic process(GO:0045492) |
| 0.1 | 4.0 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.2 | 3.7 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
| 0.7 | 3.4 | GO:0042218 | 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218) |
| 0.8 | 3.3 | GO:0090308 | regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 39.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 12.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 9.0 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 7.5 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 7.3 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 6.9 | GO:0010319 | stromule(GO:0010319) |
| 0.3 | 4.2 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.0 | 3.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 3.4 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.2 | 3.3 | GO:0005720 | nuclear heterochromatin(GO:0005720) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.8 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 5.7 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.5 | 5.3 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.2 | 5.3 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 5.3 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 4.9 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 4.8 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.2 | 4.4 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.1 | 4.3 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.3 | 4.1 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 5.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.8 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.1 | 0.7 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.6 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.1 | 0.4 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.4 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.4 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.0 | 0.4 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.0 | 0.3 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.1 | 0.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 5.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.3 | 1.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.7 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.6 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.0 | 0.5 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |
| 0.0 | 0.5 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.3 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.0 | 0.1 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |