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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G77920
Z-value: 1.54
Transcription factors associated with AT1G77920
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G77920
|
AT1G77920 | bZIP transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TGA7 | arTal_v1_Chr1_+_29298243_29298243 | 0.86 | 5.6e-09 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_6242541_6242541 Show fit | 7.98 |
AT2G14610.1
|
pathogenesis-related protein 1 |
|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 7.35 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr4_+_6491017_6491017 Show fit | 6.84 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr2_+_6213972_6213972 Show fit | 6.64 |
AT2G14560.2
AT2G14560.1 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr3_+_19239305_19239412 Show fit | 6.62 |
AT3G51860.1
AT3G51860.2 |
cation exchanger 3 |
|
| arTal_v1_Chr2_+_6213617_6213676 Show fit | 6.49 |
AT2G14560.3
AT2G14560.4 |
LURP-one-like protein (DUF567) |
|
| arTal_v1_Chr5_-_2176446_2176446 Show fit | 6.15 |
AT5G07010.1
|
sulfotransferase 2A |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 6.08 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr1_-_1559917_1559917 Show fit | 5.94 |
AT1G05340.1
|
cysteine-rich TM module stress tolerance protein |
|
| arTal_v1_Chr5_-_5033540_5033540 Show fit | 5.84 |
AT5G15500.2
AT5G15500.1 |
Ankyrin repeat family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G77920
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 32.3 | GO:0010150 | leaf senescence(GO:0010150) |
| 0.2 | 19.3 | GO:0010200 | response to chitin(GO:0010200) |
| 0.2 | 18.3 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.1 | 18.2 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.3 | 15.5 | GO:0090487 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.0 | 11.7 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.9 | 11.2 | GO:1900056 | negative regulation of leaf senescence(GO:1900056) |
| 0.5 | 10.9 | GO:0010072 | primary shoot apical meristem specification(GO:0010072) |
| 0.4 | 10.6 | GO:2000031 | regulation of salicylic acid mediated signaling pathway(GO:2000031) |
| 2.1 | 10.5 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 46.1 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.8 | 11.3 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.1 | 10.6 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 9.8 | GO:0000139 | Golgi membrane(GO:0000139) |
| 0.1 | 9.0 | GO:0000785 | chromatin(GO:0000785) |
| 0.1 | 8.9 | GO:0005615 | extracellular space(GO:0005615) |
| 0.1 | 7.7 | GO:0031224 | intrinsic component of membrane(GO:0031224) |
| 0.2 | 7.4 | GO:0016592 | mediator complex(GO:0016592) |
| 0.3 | 5.1 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.1 | 5.1 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 42.2 | GO:0044212 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 21.2 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 13.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 11.8 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 1.0 | 10.9 | GO:0102360 | daphnetin 3-O-glucosyltransferase activity(GO:0102360) |
| 0.3 | 10.7 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.4 | 8.7 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
| 0.7 | 7.8 | GO:0008107 | galactoside 2-alpha-L-fucosyltransferase activity(GO:0008107) alpha-(1,2)-fucosyltransferase activity(GO:0031127) |
| 0.1 | 6.8 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 1.1 | 6.6 | GO:0015369 | calcium:proton antiporter activity(GO:0015369) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 3.0 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.4 | 2.3 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.4 | 1.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.3 | 1.3 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.2 | 1.2 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 1.0 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 0.9 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.3 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
| 0.1 | 0.3 | PID SHP2 PATHWAY | SHP2 signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 12.3 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.8 | 3.9 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.5 | 3.2 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.1 | 2.6 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.4 | 1.3 | REACTOME POTASSIUM CHANNELS | Genes involved in Potassium Channels |
| 0.2 | 1.3 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.2 | 1.3 | REACTOME HOST INTERACTIONS OF HIV FACTORS | Genes involved in Host Interactions of HIV factors |
| 0.1 | 1.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 1.0 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.3 | 0.9 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |