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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G77200
Z-value: 0.90
Transcription factors associated with AT1G77200
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G77200
|
AT1G77200 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G77200 | arTal_v1_Chr1_-_29005281_29005281 | 0.30 | 1.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 3.41 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 3.13 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr3_-_19139423_19139423 Show fit | 2.54 |
AT3G51600.1
|
lipid transfer protein 5 |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 2.54 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 2.46 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr5_+_5237970_5238178 Show fit | 2.45 |
AT5G16030.1
AT5G16030.4 AT5G16030.2 AT5G16030.3 |
mental retardation GTPase activating protein |
|
| arTal_v1_Chr5_-_8916856_8916856 Show fit | 2.36 |
AT5G25610.1
|
BURP domain-containing protein |
|
| arTal_v1_Chr3_-_1860797_1860797 Show fit | 2.32 |
AT3G06145.1
|
RING zinc finger protein |
|
| arTal_v1_Chr2_+_18626188_18626188 Show fit | 2.31 |
AT2G45180.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_26298728_26298728 Show fit | 2.29 |
AT5G65730.1
|
xyloglucan endotransglucosylase/hydrolase 6 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G77200
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 14.9 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.6 | 10.1 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.0 | 10.0 | GO:0006468 | protein phosphorylation(GO:0006468) |
| 0.1 | 7.4 | GO:0000160 | phosphorelay signal transduction system(GO:0000160) |
| 0.1 | 6.8 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 4.6 | GO:0010020 | chloroplast fission(GO:0010020) plastid fission(GO:0043572) |
| 0.0 | 4.4 | GO:0009741 | response to brassinosteroid(GO:0009741) |
| 0.0 | 4.4 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.1 | 4.3 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 0.6 | 3.9 | GO:0019464 | glycine decarboxylation via glycine cleavage system(GO:0019464) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 33.8 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 18.8 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 16.5 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 12.6 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.2 | 10.5 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 7.7 | GO:0031969 | chloroplast membrane(GO:0031969) |
| 0.0 | 7.0 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.1 | 6.0 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 5.7 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 3.9 | GO:0072686 | mitotic spindle(GO:0072686) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 12.2 | GO:0016301 | kinase activity(GO:0016301) |
| 0.4 | 10.7 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.7 | 10.1 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.3 | 9.4 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 6.4 | GO:0046983 | protein dimerization activity(GO:0046983) |
| 0.2 | 5.6 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.0 | 4.9 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 4.5 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.2 | 4.4 | GO:0010329 | auxin efflux transmembrane transporter activity(GO:0010329) |
| 0.1 | 4.3 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.4 | 1.4 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.1 | 0.7 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.6 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 0.5 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.2 | 0.5 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.0 | 0.3 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.2 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.1 | PID FANCONI PATHWAY | Fanconi anemia pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 3.5 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.6 | 1.7 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.1 | 1.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 0.9 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.9 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.2 | 0.7 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.7 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.2 | 0.6 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.1 | 0.4 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.1 | 0.4 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |