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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G76880
Z-value: 0.27
Transcription factors associated with AT1G76880
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G76880
|
AT1G76880 | Duplicated homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G76880 | arTal_v1_Chr1_+_28865314_28865314 | -0.26 | 1.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_11532199_11532199 Show fit | 1.08 |
AT1G32060.1
|
phosphoribulokinase |
|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 1.06 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 0.99 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
|
| arTal_v1_Chr4_+_17243583_17243583 Show fit | 0.86 |
AT4G36540.2
AT4G36540.1 |
BR enhanced expression 2 |
|
| arTal_v1_Chr3_+_2563803_2563803 Show fit | 0.77 |
AT3G08030.1
|
DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr1_+_27452748_27452766 Show fit | 0.77 |
AT1G72970.1
AT1G72970.2 |
Glucose-methanol-choline (GMC) oxidoreductase family protein |
|
| arTal_v1_Chr3_+_2564153_2564153 Show fit | 0.77 |
AT3G08030.2
|
DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr1_+_11396402_11396402 Show fit | 0.75 |
AT1G31800.1
|
cytochrome P450, family 97, subfamily A, polypeptide 3 |
|
| arTal_v1_Chr5_+_13830429_13830429 Show fit | 0.73 |
AT5G35630.1
|
glutamine synthetase 2 |
|
| arTal_v1_Chr5_+_13831020_13831020 Show fit | 0.72 |
AT5G35630.2
|
glutamine synthetase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G76880
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.2 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
| 0.1 | 1.1 | GO:0019253 | carbon fixation(GO:0015977) reductive pentose-phosphate cycle(GO:0019253) |
| 0.1 | 1.0 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 0.9 | GO:0007143 | female meiotic division(GO:0007143) |
| 0.0 | 0.9 | GO:0048825 | cotyledon development(GO:0048825) |
| 0.0 | 0.9 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 0.8 | GO:0016123 | xanthophyll biosynthetic process(GO:0016123) |
| 0.0 | 0.8 | GO:0019395 | fatty acid oxidation(GO:0019395) |
| 0.1 | 0.7 | GO:0010190 | cytochrome b6f complex assembly(GO:0010190) |
| 0.1 | 0.7 | GO:0046294 | formaldehyde catabolic process(GO:0046294) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.1 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 0.4 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
| 0.0 | 0.2 | GO:0030126 | COPI vesicle coat(GO:0030126) COPI-coated vesicle membrane(GO:0030663) |
| 0.0 | 0.1 | GO:0032044 | DSIF complex(GO:0032044) |
| 0.0 | 0.1 | GO:0010369 | chromocenter(GO:0010369) |
| 0.0 | 0.1 | GO:0071782 | endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | GO:0004356 | glutamate-ammonia ligase activity(GO:0004356) |
| 0.0 | 1.1 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 1.0 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.3 | 0.8 | GO:0010291 | carotene beta-ring hydroxylase activity(GO:0010291) |
| 0.2 | 0.8 | GO:0046593 | mandelonitrile lyase activity(GO:0046593) |
| 0.1 | 0.7 | GO:0004024 | alcohol dehydrogenase activity, zinc-dependent(GO:0004024) |
| 0.2 | 0.6 | GO:0070330 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330) |
| 0.1 | 0.6 | GO:0047769 | prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769) |
| 0.1 | 0.6 | GO:0016464 | chloroplast protein-transporting ATPase activity(GO:0016464) |
| 0.0 | 0.6 | GO:0030247 | pattern binding(GO:0001871) polysaccharide binding(GO:0030247) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |