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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G76420
Z-value: 3.69
Transcription factors associated with AT1G76420
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G76420
|
AT1G76420 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| CUC3 | arTal_v1_Chr1_-_28674045_28674045 | 0.30 | 1.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 28.17 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 24.53 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 24.14 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 23.14 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 22.16 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr3_-_162905_162905 Show fit | 21.64 |
AT3G01420.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 21.50 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr1_+_25765718_25765718 Show fit | 21.28 |
AT1G68620.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 21.23 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr5_+_16290386_16290386 Show fit | 20.62 |
AT5G40690.1
|
histone-lysine N-methyltransferase trithorax-like protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G76420
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 67.6 | GO:0007568 | aging(GO:0007568) |
| 1.0 | 57.2 | GO:0009749 | response to glucose(GO:0009749) |
| 1.6 | 50.7 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 1.2 | 48.8 | GO:0006623 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 2.6 | 46.7 | GO:0015996 | chlorophyll catabolic process(GO:0015996) pigment catabolic process(GO:0046149) |
| 1.4 | 44.7 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.3 | 44.0 | GO:0071453 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.8 | 43.3 | GO:0009817 | defense response to fungus, incompatible interaction(GO:0009817) |
| 4.3 | 42.7 | GO:0001676 | long-chain fatty acid metabolic process(GO:0001676) |
| 0.8 | 42.3 | GO:0002239 | response to oomycetes(GO:0002239) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 311.6 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.0 | 94.7 | GO:0005634 | nucleus(GO:0005634) |
| 0.2 | 74.0 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.4 | 54.5 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 48.6 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.5 | 44.1 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.9 | 43.1 | GO:0000323 | lytic vacuole(GO:0000323) |
| 0.6 | 36.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 34.5 | GO:0005730 | nucleolus(GO:0005730) |
| 3.6 | 32.2 | GO:0017119 | Golgi transport complex(GO:0017119) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 114.3 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 78.3 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
| 1.0 | 74.4 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.6 | 69.8 | GO:0019900 | kinase binding(GO:0019900) |
| 0.5 | 65.3 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 62.1 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.7 | 52.5 | GO:0015171 | amino acid transmembrane transporter activity(GO:0015171) |
| 0.7 | 40.8 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.6 | 40.8 | GO:0008234 | cysteine-type peptidase activity(GO:0008234) |
| 4.2 | 37.4 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.2 | 9.5 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 1.9 | 9.5 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 1.9 | 5.6 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 1.0 | 4.1 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.4 | 4.1 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.3 | 3.5 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.5 | 3.3 | PID NOTCH PATHWAY | Notch signaling pathway |
| 1.0 | 2.9 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.9 | 2.8 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.6 | 2.3 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 12.8 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
| 1.4 | 12.4 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 1.8 | 10.7 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 2.4 | 9.5 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 2.3 | 9.2 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 1.3 | 7.6 | REACTOME APOPTOSIS | Genes involved in Apoptosis |
| 1.5 | 7.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 2.4 | 7.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.5 | 4.1 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.2 | 2.6 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |