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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G75240
Z-value: 0.88
Transcription factors associated with AT1G75240
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G75240
|
AT1G75240 | homeobox protein 33 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB33 | arTal_v1_Chr1_+_28241011_28241011 | 0.49 | 8.2e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 3.36 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 3.18 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 2.97 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 2.95 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 2.75 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 2.50 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 2.50 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 2.49 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 2.48 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 2.47 |
AT3G01500.3
|
carbonic anhydrase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G75240
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 19.7 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.9 | 17.3 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 15.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 15.3 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.9 | 11.6 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.2 | 8.7 | GO:0009767 | photosynthetic electron transport chain(GO:0009767) |
| 0.2 | 6.3 | GO:0008544 | epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855) |
| 0.3 | 5.6 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.1 | 5.6 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.3 | 5.0 | GO:0006833 | water transport(GO:0006833) fluid transport(GO:0042044) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 69.7 | GO:0005576 | extracellular region(GO:0005576) |
| 0.2 | 46.9 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 30.7 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 21.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 16.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 16.1 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.3 | 14.6 | GO:0010319 | stromule(GO:0010319) |
| 0.2 | 9.1 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.1 | 7.0 | GO:0005874 | microtubule(GO:0005874) |
| 0.3 | 6.9 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 15.3 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.4 | 13.8 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 12.8 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.1 | 10.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.4 | 9.8 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.4 | 8.3 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.3 | 7.8 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.3 | 6.7 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.1 | 6.6 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.1 | 5.8 | GO:0004650 | polygalacturonase activity(GO:0004650) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 9.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 1.2 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.2 | 1.0 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.2 | 0.9 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.3 | 0.8 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.1 | 0.8 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.2 | 0.7 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.7 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.2 | 0.6 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.2 | 0.5 | PID BCR 5PATHWAY | BCR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.3 | 13.8 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 2.7 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.5 | 1.4 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.4 | 1.2 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.1 | 1.1 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.1 | 0.7 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.1 | 0.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 0.5 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.2 | 0.5 | REACTOME TCR SIGNALING | Genes involved in TCR signaling |
| 0.2 | 0.5 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |