ISMARA results: AT1G74930

Project

GSE43616: Time-course of wild-type Arabidopsis leaf

Navigation

Downloads

Results for AT1G74930

Z-value: 0.54

Transcription factors associated with AT1G74930

Gene Symbol	Gene ID	Gene Info
AT1G74930 TAIR	AT1G74930	Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
ORA47	arTal_v1_Chr1_+_28143851_28143851	-0.22	2.6e-01	Click!

Activity profile of AT1G74930 motif

Sorted Z-values of AT1G74930 motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr4_+_15828228_15828228 Show fit	5.72	AT4G32810.1 AT4G32810.2	CCD8 TAIR Show fit	carotenoid cleavage dioxygenase 8
arTal_v1_Chr2_+_18558885_18558938 Show fit	4.46	AT2G44990.2 AT2G44990.3 AT2G44990.1	CCD7 TAIR Show fit	carotenoid cleavage dioxygenase 7
arTal_v1_Chr4_-_13222376_13222376 Show fit	2.54	AT4G26080.1	ABI1 TAIR Show fit	Protein phosphatase 2C family protein
arTal_v1_Chr5_+_23087122_23087153 Show fit	2.28	AT5G57050.1 AT5G57050.3 AT5G57050.2	ABI2 TAIR Show fit	Protein phosphatase 2C family protein
arTal_v1_Chr4_+_14034536_14034614 Show fit	2.12	AT4G28370.3 AT4G28370.2 AT4G28370.1 AT4G28370.4	AT4G28370 TAIR Show fit	RING/U-box superfamily protein
arTal_v1_Chr1_+_28070295_28070296 Show fit	1.53	AT1G74710.1 AT1G74710.2	EDS16 TAIR Show fit	ADC synthase superfamily protein
arTal_v1_Chr1_-_29492875_29492875 Show fit	1.17	AT1G78390.1	NCED9 TAIR Show fit	nine-cis-epoxycarotenoid dioxygenase 9
arTal_v1_Chr3_-_4834015_4834015 Show fit	1.10	AT3G14440.1	NCED3 TAIR Show fit	nine-cis-epoxycarotenoid dioxygenase 3
arTal_v1_Chr5_-_979849_979849 Show fit	0.70	AT5G03730.1 AT5G03730.2	CTR1 TAIR Show fit	Protein kinase superfamily protein
arTal_v1_Chr5_+_1608988_1608988 Show fit	0.50	AT5G05440.1	PYL5 TAIR Show fit	Polyketide cyclase/dehydrase and lipid transport superfamily protein

Showing 1 to 10 of 11 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G74930

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
3.4	10.2	GO:0016118	tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124)
0.0	2.5	GO:0009788	negative regulation of abscisic acid-activated signaling pathway(GO:0009788)
0.4	2.3	GO:0046247	carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.2	2.3	GO:0010205	photoinhibition(GO:0010205) negative regulation of photosynthesis, light reaction(GO:0043155)
0.2	1.5	GO:0060866	leaf abscission(GO:0060866)
0.1	0.8	GO:0080163	regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.2	0.7	GO:0017145	stem cell division(GO:0017145)

Showing 1 to 7 of 7 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	12.5	GO:0009570	chloroplast stroma(GO:0009570)
0.1	4.8	GO:0008287	protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293)

Showing 1 to 2 of 2 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
1.4	12.5	GO:0010436	carotenoid dioxygenase activity(GO:0010436)
0.0	4.8	GO:0004722	protein serine/threonine phosphatase activity(GO:0004722)
0.5	1.5	GO:0008909	isochorismate synthase activity(GO:0008909)
0.0	0.8	GO:0004864	protein phosphatase inhibitor activity(GO:0004864)
0.0	0.7	GO:0004712	protein serine/threonine/tyrosine kinase activity(GO:0004712)

Showing 1 to 5 of 5 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.5	2.5	PID ECADHERIN NASCENT AJ PATHWAY	E-cadherin signaling in the nascent adherens junction
0.3	2.3	PID RAC1 PATHWAY	RAC1 signaling pathway

Showing 1 to 2 of 2 entries

Results for AT1G74930

Z-value: 0.54

Transcription factors associated with AT1G74930

Activity-expression correlation:

Activity profile of AT1G74930 motif

Sorted Z-values of AT1G74930 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G74930

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category: