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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G74650
Z-value: 1.57
Transcription factors associated with AT1G74650
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G74650
|
AT1G74650 | myb domain protein 31 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB31 | arTal_v1_Chr1_+_28041146_28041167 | 0.71 | 2.1e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 4.86 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 4.15 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 3.55 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr1_-_23238644_23238644 Show fit | 3.46 |
AT1G62760.1
|
Plant invertase/pectin methylesterase inhibitor superfamily protein |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 3.44 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr3_-_3197457_3197457 Show fit | 3.26 |
AT3G10320.1
|
Glycosyltransferase family 61 protein |
|
| arTal_v1_Chr5_+_5658416_5658416 Show fit | 3.13 |
AT5G17220.1
|
glutathione S-transferase phi 12 |
|
| arTal_v1_Chr1_+_20387058_20387058 Show fit | 3.11 |
AT1G54575.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_17166032_17166032 Show fit | 3.07 |
AT5G42800.1
|
dihydroflavonol 4-reductase |
|
| arTal_v1_Chr1_+_20386809_20386809 Show fit | 3.06 |
AT1G54575.2
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G74650
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 44.0 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 38.0 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.4 | 12.4 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.3 | 10.6 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.1 | 9.9 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 0.1 | 9.2 | GO:0000398 | mRNA splicing, via spliceosome(GO:0000398) |
| 0.1 | 9.1 | GO:0030163 | protein catabolic process(GO:0030163) |
| 0.2 | 8.4 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.2 | 8.3 | GO:0016036 | cellular response to phosphate starvation(GO:0016036) |
| 0.2 | 8.2 | GO:0060548 | negative regulation of cell death(GO:0060548) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 48.3 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 27.1 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.1 | 22.4 | GO:0005730 | nucleolus(GO:0005730) |
| 0.3 | 13.5 | GO:0000323 | lytic vacuole(GO:0000323) |
| 0.1 | 12.9 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.2 | 10.4 | GO:0016592 | mediator complex(GO:0016592) |
| 0.1 | 9.2 | GO:0005681 | spliceosomal complex(GO:0005681) |
| 0.1 | 9.1 | GO:0043657 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.1 | 8.6 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.4 | 7.6 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 19.6 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 18.5 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 17.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 14.2 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
| 0.1 | 13.6 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.2 | 13.4 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.3 | 12.5 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.1 | 12.4 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.2 | 11.3 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.2 | 10.6 | GO:0004364 | glutathione transferase activity(GO:0004364) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.4 | 2.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 2.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.4 | 2.1 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.5 | 1.6 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.3 | 1.5 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.2 | 1.3 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.2 | 1.0 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.3 | 0.9 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.9 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.2 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.3 | 2.5 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.3 | 1.9 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.3 | 1.7 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.3 | 1.6 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.4 | 1.5 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.2 | 1.5 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.3 | 1.4 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.1 | 1.4 | REACTOME ACTIVATION OF THE MRNA UPON BINDING OF THE CAP BINDING COMPLEX AND EIFS AND SUBSEQUENT BINDING TO 43S | Genes involved in Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S |
| 0.1 | 1.2 | REACTOME HEMOSTASIS | Genes involved in Hemostasis |