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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G71930

Z-value: 1.22

Transcription factors associated with AT1G71930

Gene Symbol Gene ID Gene Info
AT1G71930
AT1G71930 vascular related NAC-domain protein 7

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
VND7arTal_v1_Chr1_+_27076020_270760200.745.9e-06Click!

Activity profile of AT1G71930 motif

Sorted Z-values of AT1G71930 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_16810482 5.31 AT4G35350.2
AT4G35350.1
XCP1
xylem cysteine peptidase 1
Chr1_+_7252111 5.19 AT1G20850.1
XCP2
xylem cysteine peptidase 2
Chr1_+_310169 4.75 AT1G01900.1
SBTI1.1
subtilase family protein
Chr5_-_753657 4.38 AT5G03170.1
FLA11
FASCICLIN-like arabinogalactan-protein 11
Chr2_+_15934244 3.84 AT2G38080.1
IRX12
Laccase/Diphenol oxidase family protein
Chr3_-_5777841 2.70 AT3G16920.1
CTL2
chitinase-like protein
Chr4_-_10316886 2.59 AT4G18780.1
IRX1
cellulose synthase family protein
Chr3_-_5778052 2.44 AT3G16920.2
CTL2
chitinase-like protein
Chr4_-_5162774 2.25 AT4G08160.2
AT4G08160.1
AT4G08160
glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
Chr5_+_17714390 2.21 AT5G44030.2
AT5G44030.1
CESA4
cellulose synthase A4
Chr2_-_12338836 2.09 AT2G28760.3
AT2G28760.1
AT2G28760.4
UXS6
UDP-XYL synthase 6
Chr5_-_23917873 1.78 AT5G59290.3
AT5G59290.2
UXS3
UDP-glucuronic acid decarboxylase 3
Chr1_+_29508951 1.75 AT1G78430.1
RIP4
ROP interactive partner 2
Chr1_-_9293862 1.73 AT1G26820.1
RNS3
ribonuclease 3
Chr5_-_23918266 1.69 AT5G59290.1
AT5G59290.4
UXS3
UDP-glucuronic acid decarboxylase 3
Chr5_+_1153740 1.59 AT5G04200.1
MC9
metacaspase 9
Chr5_+_17715687 1.30 AT5G44030.3
CESA4
cellulose synthase A4
Chr2_-_12339217 1.27 AT2G28760.2
UXS6
UDP-XYL synthase 6
Chr4_-_16063070 1.25 AT4G33330.2
AT4G33330.1
AT4G33330.5
AT4G33330.3
AT4G33330.4
PGSIP3
plant glycogenin-like starch initiation protein 3
Chr5_-_13238884 1.17 AT5G34940.2
GUS3
glucuronidase 3
Chr1_+_23337167 1.17 AT1G62990.1
KNAT7
homeobox knotted-like protein
Chr5_-_13238718 1.10 AT5G34940.3
GUS3
glucuronidase 3
Chr1_+_10010124 1.06 AT1G28470.1
NAC010
NAC domain containing protein 10
Chr2_-_19222916 0.95 AT2G46770.1
NST1
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr5_-_13238457 0.93 AT5G34940.1
GUS3
glucuronidase 3
Chr1_+_27076020 0.89 AT1G71930.1
VND7
vascular related NAC-domain protein 7
Chr5_-_13237662 0.87 AT5G34940.4
GUS3
glucuronidase 3
Chr1_-_23721774 0.85 AT1G63910.1
AtMYB103
myb domain protein 103
Chr2_-_14644355 0.82 AT2G34710.1
PHB
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Chr4_-_717579 0.77 AT4G01680.3
AT4G01680.1
MYB55
myb domain protein 55
Chr1_+_27074702 0.75 AT1G71930.2
VND7
vascular related NAC-domain protein 7
Chr3_-_2578276 0.60 AT3G08500.1
MYB83
myb domain protein 83
Chr4_-_717415 0.56 AT4G01680.2
MYB55
myb domain protein 55
Chr5_+_18643540 0.49 AT5G45970.1
RAC2
RAC-like 2
Chr2_+_13841180 0.31 AT2G32620.4
CSLB02
cellulose synthase-like B
Chr2_+_13840687 0.31 AT2G32620.2
AT2G32620.1
AT2G32620.3
CSLB02
cellulose synthase-like B
Chr5_-_4065075 0.19 AT5G12870.1
MYB46
myb domain protein 46
Chr2_+_13836117 0.19 AT2G32610.1
CSLB01
cellulose synthase-like B1
Chr1_-_9531489 0.16 AT1G27440.1
GUT2
Exostosin family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G71930

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 10.5 GO:0010623 programmed cell death involved in cell development(GO:0010623)
0.8 6.8 GO:0033319 UDP-D-xylose metabolic process(GO:0033319) UDP-D-xylose biosynthetic process(GO:0033320)
0.6 2.6 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.3 5.1 GO:0006026 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.2 1.6 GO:0090059 protoxylem development(GO:0090059)
0.2 0.8 GO:1900378 positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.2 16.8 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.1 2.3 GO:0045493 xylan catabolic process(GO:0045493)
0.1 0.5 GO:0009855 determination of bilateral symmetry(GO:0009855)
0.0 0.8 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.0 1.7 GO:0006401 RNA catabolic process(GO:0006401)
0.0 0.5 GO:0008360 regulation of cell shape(GO:0008360)
0.0 1.3 GO:0010119 regulation of stomatal movement(GO:0010119)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 10.5 GO:0005764 lysosome(GO:0005764)
0.2 4.8 GO:0031012 extracellular matrix(GO:0031012)
0.0 6.9 GO:0005802 trans-Golgi network(GO:0005802)
0.0 4.1 GO:0009505 plant-type cell wall(GO:0009505)
0.0 4.4 GO:0031225 anchored component of membrane(GO:0031225)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 6.8 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.5 4.1 GO:0004566 beta-glucuronidase activity(GO:0004566)
0.4 1.4 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.3 1.7 GO:0033897 ribonuclease T2 activity(GO:0033897)
0.2 5.1 GO:0004568 chitinase activity(GO:0004568)
0.2 6.9 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.2 2.3 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
0.2 3.8 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.1 9.6 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 4.8 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 1.6 GO:0008234 cysteine-type peptidase activity(GO:0008234)
0.0 1.6 GO:0046982 protein heterodimerization activity(GO:0046982)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 PID IL8 CXCR2 PATHWAY IL8- and CXCR2-mediated signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 REACTOME SEMAPHORIN INTERACTIONS Genes involved in Semaphorin interactions