ISMARA results: AT1G71930

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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G71930

Z-value: 1.22

Transcription factors associated with AT1G71930

Gene Symbol	Gene ID	Gene Info
AT1G71930 TAIR	AT1G71930	vascular related NAC-domain protein 7

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
VND7	arTal_v1_Chr1_+_27076020_27076020	0.74	5.9e-06	Click!

Activity profile of AT1G71930 motif

Sorted Z-values of AT1G71930 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr4_+_16810482_16810482 Show fit	5.31	AT4G35350.2 AT4G35350.1	XCP1 TAIR Show fit	xylem cysteine peptidase 1
arTal_v1_Chr1_+_7252111_7252111 Show fit	5.19	AT1G20850.1	XCP2 TAIR Show fit	xylem cysteine peptidase 2
arTal_v1_Chr1_+_310169_310169 Show fit	4.75	AT1G01900.1	SBTI1.1 TAIR Show fit	subtilase family protein
arTal_v1_Chr5_-_753657_753657 Show fit	4.38	AT5G03170.1	FLA11 TAIR Show fit	FASCICLIN-like arabinogalactan-protein 11
arTal_v1_Chr2_+_15934244_15934244 Show fit	3.84	AT2G38080.1	IRX12 TAIR Show fit	Laccase/Diphenol oxidase family protein
arTal_v1_Chr3_-_5777841_5777841 Show fit	2.70	AT3G16920.1	CTL2 TAIR Show fit	chitinase-like protein
arTal_v1_Chr4_-_10316886_10316886 Show fit	2.59	AT4G18780.1	IRX1 TAIR Show fit	cellulose synthase family protein
arTal_v1_Chr3_-_5778052_5778052 Show fit	2.44	AT3G16920.2	CTL2 TAIR Show fit	chitinase-like protein
arTal_v1_Chr4_-_5162774_5162867 Show fit	2.25	AT4G08160.2 AT4G08160.1	AT4G08160 TAIR Show fit	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
arTal_v1_Chr5_+_17714390_17714390 Show fit	2.21	AT5G44030.2 AT5G44030.1	CESA4 TAIR Show fit	cellulose synthase A4

Showing 1 to 10 of 39 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G71930

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	16.8	GO:0009834	plant-type secondary cell wall biogenesis(GO:0009834)
1.5	10.5	GO:0010623	programmed cell death involved in cell development(GO:0010623)
0.8	6.8	GO:0033319	UDP-D-xylose metabolic process(GO:0033319) UDP-D-xylose biosynthetic process(GO:0033320)
0.3	5.1	GO:0006026	aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.6	2.6	GO:0010116	positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.1	2.3	GO:0045493	xylan catabolic process(GO:0045493)
0.0	1.7	GO:0006401	RNA catabolic process(GO:0006401)
0.2	1.6	GO:0090059	protoxylem development(GO:0090059)
0.0	1.3	GO:0010119	regulation of stomatal movement(GO:0010119)
0.2	0.8	GO:1900378	positive regulation of secondary metabolite biosynthetic process(GO:1900378)

Showing 1 to 10 of 13 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.3	10.5	GO:0005764	lysosome(GO:0005764)
0.0	6.9	GO:0005802	trans-Golgi network(GO:0005802)
0.2	4.8	GO:0031012	extracellular matrix(GO:0031012)
0.0	4.4	GO:0031225	anchored component of membrane(GO:0031225)
0.0	4.1	GO:0009505	plant-type cell wall(GO:0009505)

Showing 1 to 5 of 5 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	9.6	GO:0004197	cysteine-type endopeptidase activity(GO:0004197)
0.2	6.9	GO:0016760	cellulose synthase (UDP-forming) activity(GO:0016760)
0.6	6.8	GO:0048040	UDP-glucuronate decarboxylase activity(GO:0048040)
0.2	5.1	GO:0004568	chitinase activity(GO:0004568)
0.0	4.8	GO:0004252	serine-type endopeptidase activity(GO:0004252)
0.5	4.1	GO:0004566	beta-glucuronidase activity(GO:0004566)
0.2	3.8	GO:0052716	hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.2	2.3	GO:0031176	endo-1,4-beta-xylanase activity(GO:0031176)
0.3	1.7	GO:0033897	ribonuclease T2 activity(GO:0033897)
0.0	1.6	GO:0008234	cysteine-type peptidase activity(GO:0008234)

Showing 1 to 10 of 12 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.5	PID IL8 CXCR2 PATHWAY	IL8- and CXCR2-mediated signaling events

Showing 1 to 1 of 1 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.5	REACTOME SEMAPHORIN INTERACTIONS	Genes involved in Semaphorin interactions

Showing 1 to 1 of 1 entries

Results for AT1G71930

Z-value: 1.22

Transcription factors associated with AT1G71930

Activity-expression correlation:

Activity profile of AT1G71930 motif

Sorted Z-values of AT1G71930 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G71930

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: